Mouse models of pediatric high-grade gliomas with MYCN amplification reveal intratumoral heterogeneity and lineage signatures
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-023-43564-w
Download full text from publisher
References listed on IDEAS
- Yuan Pan & Jared D. Hysinger & Tara Barron & Nicki F. Schindler & Olivia Cobb & Xiaofan Guo & Belgin Yalçın & Corina Anastasaki & Sara B. Mulinyawe & Anitha Ponnuswami & Suzanne Scheaffer & Yu Ma & Ku, 2021. "NF1 mutation drives neuronal activity-dependent initiation of optic glioma," Nature, Nature, vol. 594(7862), pages 277-282, June.
- Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2010. "Regularization Paths for Generalized Linear Models via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 33(i01).
- David Capper & David T. W. Jones & Martin Sill & Volker Hovestadt & Daniel Schrimpf & Dominik Sturm & Christian Koelsche & Felix Sahm & Lukas Chavez & David E. Reuss & Annekathrin Kratz & Annika K. We, 2018. "DNA methylation-based classification of central nervous system tumours," Nature, Nature, vol. 555(7697), pages 469-474, March.
- Yinghua Li & Bo Li & Wei Li & Yuan Wang & Seçkin Akgül & Daniel M. Treisman & Kevin A. Heist & Brianna R. Pierce & Benjamin Hoff & Cheng-Ying Ho & David O. Ferguson & Alnawaz Rehemtulla & Siyuan Zheng, 2020. "Murine models of IDH-wild-type glioblastoma exhibit spatial segregation of tumor initiation and manifestation during evolution," Nature Communications, Nature, vol. 11(1), pages 1-19, December.
- Paul A. Northcott & Ivo Buchhalter & A. Sorana Morrissy & Volker Hovestadt & Joachim Weischenfeldt & Tobias Ehrenberger & Susanne Gröbner & Maia Segura-Wang & Thomas Zichner & Vasilisa A. Rudneva & Ha, 2017. "The whole-genome landscape of medulloblastoma subtypes," Nature, Nature, vol. 547(7663), pages 311-317, July.
- Pengxiang Chen & Wei Wang & Rui Liu & Jiahui Lyu & Lei Zhang & Baizhou Li & Biying Qiu & Anhao Tian & Wenhong Jiang & Honggang Ying & Rui Jing & Qianqian Wang & Keqing Zhu & Ruiliang Bai & Linghui Zen, 2022. "Olfactory sensory experience regulates gliomagenesis via neuronal IGF1," Nature, Nature, vol. 606(7914), pages 550-556, June.
- Paul Gibson & Yiai Tong & Giles Robinson & Margaret C. Thompson & D. Spencer Currle & Christopher Eden & Tanya A. Kranenburg & Twala Hogg & Helen Poppleton & Julie Martin & David Finkelstein & Stanley, 2010. "Subtypes of medulloblastoma have distinct developmental origins," Nature, Nature, vol. 468(7327), pages 1095-1099, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- David R. Ghasemi & Konstantin Okonechnikov & Anne Rademacher & Stephan Tirier & Kendra K. Maass & Hanna Schumacher & Piyush Joshi & Maxwell P. Gold & Julia Sundheimer & Britta Statz & Ahmet S. Rifaiog, 2024. "Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Xi Lu & Naga Prathyusha Maturi & Malin Jarvius & Irem Yildirim & Yonglong Dang & Linxuan Zhao & Yuan Xie & E-Jean Tan & Pengwei Xing & Rolf Larsson & Mårten Fryknäs & Lene Uhrbom & Xingqi Chen, 2022. "Cell-lineage controlled epigenetic regulation in glioblastoma stem cells determines functionally distinct subgroups and predicts patient survival," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- Min Kyung Lee & Nasim Azizgolshani & Ze Zhang & Laurent Perreard & Fred W. Kolling & Lananh N. Nguyen & George J. Zanazzi & Lucas A. Salas & Brock C. Christensen, 2024. "Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Jie Yang & Qianghu Wang & Ze-Yan Zhang & Lihong Long & Ravesanker Ezhilarasan & Jerome M. Karp & Aristotelis Tsirigos & Matija Snuderl & Benedikt Wiestler & Wolfgang Wick & Yinsen Miao & Jason T. Huse, 2022. "DNA methylation-based epigenetic signatures predict somatic genomic alterations in gliomas," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Fengju Chen & Yiqun Zhang & Lanlan Shen & Chad J. Creighton, 2024. "The DNA methylome of pediatric brain tumors appears shaped by structural variation and predicts survival," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Shweta Godbole & Hannah Voß & Antonia Gocke & Simon Schlumbohm & Yannis Schumann & Bojia Peng & Martin Mynarek & Stefan Rutkowski & Matthias Dottermusch & Mario M. Dorostkar & Andrey Korshunov & Thoma, 2024. "Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level," Nature Communications, Nature, vol. 15(1), pages 1-24, December.
- Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
- Ernesto Carrella & Richard M. Bailey & Jens Koed Madsen, 2018. "Indirect inference through prediction," Papers 1807.01579, arXiv.org.
- Rui Wang & Naihua Xiu & Kim-Chuan Toh, 2021. "Subspace quadratic regularization method for group sparse multinomial logistic regression," Computational Optimization and Applications, Springer, vol. 79(3), pages 531-559, July.
- Mkhadri, Abdallah & Ouhourane, Mohamed, 2013. "An extended variable inclusion and shrinkage algorithm for correlated variables," Computational Statistics & Data Analysis, Elsevier, vol. 57(1), pages 631-644.
- Masakazu Higuchi & Mitsuteru Nakamura & Shuji Shinohara & Yasuhiro Omiya & Takeshi Takano & Daisuke Mizuguchi & Noriaki Sonota & Hiroyuki Toda & Taku Saito & Mirai So & Eiji Takayama & Hiroo Terashi &, 2022. "Detection of Major Depressive Disorder Based on a Combination of Voice Features: An Exploratory Approach," IJERPH, MDPI, vol. 19(18), pages 1-13, September.
- Susan Athey & Guido W. Imbens & Stefan Wager, 2018.
"Approximate residual balancing: debiased inference of average treatment effects in high dimensions,"
Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 80(4), pages 597-623, September.
- Susan Athey & Guido W. Imbens & Stefan Wager, 2016. "Approximate Residual Balancing: De-Biased Inference of Average Treatment Effects in High Dimensions," Papers 1604.07125, arXiv.org, revised Jan 2018.
- Vincent, Martin & Hansen, Niels Richard, 2014. "Sparse group lasso and high dimensional multinomial classification," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 771-786.
- Chen, Le-Yu & Lee, Sokbae, 2018.
"Best subset binary prediction,"
Journal of Econometrics, Elsevier, vol. 206(1), pages 39-56.
- Le-Yu Chen & Sokbae Lee, 2016. "Best Subset Binary Prediction," Papers 1610.02738, arXiv.org, revised May 2018.
- Le-Yu Chen & Sokbae (Simon) Lee, 2017. "Best subset binary prediction," CeMMAP working papers CWP50/17, Centre for Microdata Methods and Practice, Institute for Fiscal Studies.
- Le-Yu Chen & Sokbae (Simon) Lee, 2017. "Best subset binary prediction," CeMMAP working papers 50/17, Institute for Fiscal Studies.
- Perrot-Dockès Marie & Lévy-Leduc Céline & Chiquet Julien & Sansonnet Laure & Brégère Margaux & Étienne Marie-Pierre & Robin Stéphane & Genta-Jouve Grégory, 2018. "A variable selection approach in the multivariate linear model: an application to LC-MS metabolomics data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 17(5), pages 1-14, October.
- Fan, Jianqing & Jiang, Bai & Sun, Qiang, 2022. "Bayesian factor-adjusted sparse regression," Journal of Econometrics, Elsevier, vol. 230(1), pages 3-19.
- Chuliá, Helena & Garrón, Ignacio & Uribe, Jorge M., 2024.
"Daily growth at risk: Financial or real drivers? The answer is not always the same,"
International Journal of Forecasting, Elsevier, vol. 40(2), pages 762-776.
- Helena Chuliá & Ignacio Garrón & Jorge M. Uribe, 2022. ""Daily Growth at Risk: financial or real drivers? The answer is not always the same"," IREA Working Papers 202208, University of Barcelona, Research Institute of Applied Economics, revised Jun 2022.
- Jun Li & Serguei Netessine & Sergei Koulayev, 2018. "Price to Compete … with Many: How to Identify Price Competition in High-Dimensional Space," Management Science, INFORMS, vol. 64(9), pages 4118-4136, September.
- Sung Jae Jun & Sokbae Lee, 2024.
"Causal Inference Under Outcome-Based Sampling with Monotonicity Assumptions,"
Journal of Business & Economic Statistics, Taylor & Francis Journals, vol. 42(3), pages 998-1009, July.
- Sung Jae Jun & Sokbae Lee, 2020. "Causal Inference under Outcome-Based Sampling with Monotonicity Assumptions," Papers 2004.08318, arXiv.org, revised Oct 2023.
- Rina Friedberg & Julie Tibshirani & Susan Athey & Stefan Wager, 2018. "Local Linear Forests," Papers 1807.11408, arXiv.org, revised Sep 2020.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43564-w. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.