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UV-B irradiation-activated E3 ligase GmILPA1 modulates gibberellin catabolism to increase plant height in soybean

Author

Listed:
  • Jiaqi Sun

    (Shandong University)

  • Shiyu Huang

    (Shandong University)

  • Qing Lu

    (Shandong University)

  • Shuo Li

    (Shandong University)

  • Shizhen Zhao

    (Shandong University)

  • Xiaojian Zheng

    (Shandong University)

  • Qian Zhou

    (Shandong University)

  • Wenxiao Zhang

    (Shandong University)

  • Jie Li

    (Shandong University)

  • Lili Wang

    (Shandong University)

  • Ke Zhang

    (Shandong University)

  • Wenyu Zheng

    (Shandong University)

  • Xianzhong Feng

    (Chinese Academy of Sciences)

  • Baohui Liu

    (Guangzhou University)

  • Fanjiang Kong

    (Guangzhou University)

  • Fengning Xiang

    (Shandong University)

Abstract

Plant height is a key agronomic trait that affects yield and is controlled by both phytohormone gibberellin (GA) and ultraviolet-B (UV-B) irradiation. However, whether and how plant height is modulated by UV-B-mediated changes in GA metabolism are not well understood. It has not been reported that the E3 ubiquitin ligase Anaphase Promoting Complex/Cyclosome (APC/C) is involved in the regulation of plant growth in response to environmental factors. We perform a forward genetic screen in soybean and find that a mutation in Glycine max Increased Leaf Petiole Angle1 (GmILPA1), encoding a subunit of the APC/C, lead to dwarfism under UV-B irradiation. UV-B promotes the accumulation of GmILPA1, which ubiquitinate the GA catabolic enzyme GA2 OXIDASE-like (GmGA2ox-like), resulting in its degradation in a UV-B-dependent manner. Another E3 ligase, GmUBL1, also ubiquitinate GmGA2ox-like and enhance the GmILPA1-mediated degradation of GmGA2ox-like, which suggest that GmILPA1-GmGA2ox-like module counteract the UV-B-mediated reduction of bioactive GAs. We also determine that GmILPA1 is a target of selection during soybean domestication and breeding. The deletion (Indel-665) in the promoter might facilitate the adaptation of soybean to high UV-B irradiation. This study indicates that an evolutionary GmILPA1 variant has the capability to develop ideal plant architecture with soybean cultivars.

Suggested Citation

  • Jiaqi Sun & Shiyu Huang & Qing Lu & Shuo Li & Shizhen Zhao & Xiaojian Zheng & Qian Zhou & Wenxiao Zhang & Jie Li & Lili Wang & Ke Zhang & Wenyu Zheng & Xianzhong Feng & Baohui Liu & Fanjiang Kong & Fe, 2023. "UV-B irradiation-activated E3 ligase GmILPA1 modulates gibberellin catabolism to increase plant height in soybean," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41824-3
    DOI: 10.1038/s41467-023-41824-3
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    1. Jinrong Peng & Donald E. Richards & Nigel M. Hartley & George P. Murphy & Katrien M. Devos & John E. Flintham & James Beales & Leslie J. Fish & Anthony J. Worland & Fatima Pelica & Duraialagaraja Sudh, 1999. "‘Green revolution’ genes encode mutant gibberellin response modulators," Nature, Nature, vol. 400(6741), pages 256-261, July.
    2. Liu, H. & Hu, B. & Zhang, L. & Zhao, X.J. & Shang, K.Z. & Wang, Y.S. & Wang, J., 2017. "Ultraviolet radiation over China: Spatial distribution and trends," Renewable and Sustainable Energy Reviews, Elsevier, vol. 76(C), pages 1371-1383.
    3. Jeremy Schmutz & Steven B. Cannon & Jessica Schlueter & Jianxin Ma & Therese Mitros & William Nelson & David L. Hyten & Qijian Song & Jay J. Thelen & Jianlin Cheng & Dong Xu & Uffe Hellsten & Gregory , 2010. "Genome sequence of the palaeopolyploid soybean," Nature, Nature, vol. 463(7278), pages 178-183, January.
    4. Jeremy Schmutz & Steven B. Cannon & Jessica Schlueter & Jianxin Ma & Therese Mitros & William Nelson & David L. Hyten & Qijian Song & Jay J. Thelen & Jianlin Cheng & Dong Xu & Uffe Hellsten & Gregory , 2010. "Erratum: Genome sequence of the palaeopolyploid soybean," Nature, Nature, vol. 465(7294), pages 120-120, May.
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