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A natural uORF variant confers phosphorus acquisition diversity in soybean

Author

Listed:
  • Zilong Guo

    (Fujian Agriculture and Forestry University)

  • Hongrui Cao

    (Fujian Agriculture and Forestry University)

  • Jing Zhao

    (South China Agricultural University)

  • Shuang Bai

    (Fujian Agriculture and Forestry University)

  • Wenting Peng

    (Fujian Agriculture and Forestry University)

  • Jian Li

    (Fujian Agriculture and Forestry University)

  • Lili Sun

    (Fujian Agriculture and Forestry University)

  • Liyu Chen

    (Fujian Agriculture and Forestry University)

  • Zhihao Lin

    (South China Agricultural University)

  • Chen Shi

    (Fujian Agriculture and Forestry University)

  • Qing Yang

    (Fujian Agriculture and Forestry University)

  • Yongqing Yang

    (Fujian Agriculture and Forestry University)

  • Xiurong Wang

    (South China Agricultural University)

  • Jiang Tian

    (South China Agricultural University)

  • Zhichang Chen

    (Fujian Agriculture and Forestry University)

  • Hong Liao

    (Fujian Agriculture and Forestry University)

Abstract

Phosphorus (P) is an essential element for all organisms. Because P fertilizers are a non-renewable resource and high fixation in soils, sustainable agriculture requires researchers to improve crop P acquisition efficiency. Here, we report a strong association signal at a locus of CPU1 (component of phosphorus uptake 1), from a genome-wide association study of P acquisition efficiency in a soybean core collection grown in the field. A SEC12-like gene, GmPHF1, is identified as the causal gene for CPU1. GmPHF1 facilitates the ER (endoplasmic reticulum) exit of the phosphate transporter, GmPT4, to the plasma membrane of root epidermal cells. A common SNP in an upstream open reading frame (uORF) of GmPHF1, which alters the abundance of GmPHF1 in a tissue-specific manner, contributes to P acquisition diversity in soybean. A natural genetic variation conditions diversity in soybean P acquisition, which can be used to develop P-efficient soybean genotypes.

Suggested Citation

  • Zilong Guo & Hongrui Cao & Jing Zhao & Shuang Bai & Wenting Peng & Jian Li & Lili Sun & Liyu Chen & Zhihao Lin & Chen Shi & Qing Yang & Yongqing Yang & Xiurong Wang & Jiang Tian & Zhichang Chen & Hong, 2022. "A natural uORF variant confers phosphorus acquisition diversity in soybean," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31555-2
    DOI: 10.1038/s41467-022-31555-2
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    References listed on IDEAS

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    2. Rico Gamuyao & Joong Hyoun Chin & Juan Pariasca-Tanaka & Paolo Pesaresi & Sheryl Catausan & Cheryl Dalid & Inez Slamet-Loedin & Evelyn Mae Tecson-Mendoza & Matthias Wissuwa & Sigrid Heuer, 2012. "The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency," Nature, Nature, vol. 488(7412), pages 535-539, August.
    3. Jeremy Schmutz & Steven B. Cannon & Jessica Schlueter & Jianxin Ma & Therese Mitros & William Nelson & David L. Hyten & Qijian Song & Jay J. Thelen & Jianlin Cheng & Dong Xu & Uffe Hellsten & Gregory , 2010. "Erratum: Genome sequence of the palaeopolyploid soybean," Nature, Nature, vol. 465(7294), pages 120-120, May.
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