IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-39624-w.html
   My bibliography  Save this article

Phase intensity nanoscope (PINE) opens long-time investigation windows of living matter

Author

Listed:
  • Guangjie Cui

    (University of Michigan)

  • Yunbo Liu

    (University of Michigan)

  • Di Zu

    (University of Michigan)

  • Xintao Zhao

    (University of Michigan)

  • Zhijia Zhang

    (University of Michigan)

  • Do Young Kim

    (University of Michigan)

  • Pramith Senaratne

    (University of Michigan)

  • Aaron Fox

    (University of Michigan)

  • David Sept

    (University of Michigan)

  • Younggeun Park

    (University of Michigan)

  • Somin Eunice Lee

    (University of Michigan)

Abstract

Fundamental to all living organisms and living soft matter are emergent processes in which the reorganization of individual constituents at the nanoscale drives group-level movements and shape changes at the macroscale over time. However, light-induced degradation of fluorophores, photobleaching, is a significant problem in extended bioimaging in life science. Here, we report opening a long-time investigation window by nonbleaching phase intensity nanoscope: PINE. We accomplish phase-intensity separation such that nanoprobe distributions are distinguished by an integrated phase-intensity multilayer thin film (polyvinyl alcohol/liquid crystal). We overcame a physical limit to resolve sub-10 nm cellular architectures, and achieve the first dynamic imaging of nanoscopic reorganization over 250 h using PINE. We discover nanoscopic rearrangements synchronized with the emergence of group-level movements and shape changes at the macroscale according to a set of interaction rules with importance in cellular and soft matter reorganization, self-organization, and pattern formation.

Suggested Citation

  • Guangjie Cui & Yunbo Liu & Di Zu & Xintao Zhao & Zhijia Zhang & Do Young Kim & Pramith Senaratne & Aaron Fox & David Sept & Younggeun Park & Somin Eunice Lee, 2023. "Phase intensity nanoscope (PINE) opens long-time investigation windows of living matter," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39624-w
    DOI: 10.1038/s41467-023-39624-w
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-39624-w
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-39624-w?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Kinneret Keren & Zachary Pincus & Greg M. Allen & Erin L. Barnhart & Gerard Marriott & Alex Mogilner & Julie A. Theriot, 2008. "Mechanism of shape determination in motile cells," Nature, Nature, vol. 453(7194), pages 475-480, May.
    2. Iain D. Couzin & Jens Krause & Nigel R. Franks & Simon A. Levin, 2005. "Effective leadership and decision-making in animal groups on the move," Nature, Nature, vol. 433(7025), pages 513-516, February.
    3. Nantao Li & Taylor D. Canady & Qinglan Huang & Xing Wang & Glenn A. Fried & Brian T. Cunningham, 2021. "Photonic resonator interferometric scattering microscopy," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    4. Yoshiki Sasai, 2013. "Cytosystems dynamics in self-organization of tissue architecture," Nature, Nature, vol. 493(7432), pages 318-326, January.
    5. Liana Manukyan & Sophie A. Montandon & Anamarija Fofonjka & Stanislav Smirnov & Michel C. Milinkovitch, 2017. "A living mesoscopic cellular automaton made of skin scales," Nature, Nature, vol. 544(7649), pages 173-179, April.
    6. Medhavi Vishwakarma & Jacopo Russo & Dimitri Probst & Ulrich S. Schwarz & Tamal Das & Joachim P. Spatz, 2018. "Mechanical interactions among followers determine the emergence of leaders in migrating epithelial cell collectives," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Simon Levin & Anastasios Xepapadeas, 2021. "On the Coevolution of Economic and Ecological Systems," Annual Review of Resource Economics, Annual Reviews, vol. 13(1), pages 355-377, October.
    2. Becco, Ch. & Vandewalle, N. & Delcourt, J. & Poncin, P., 2006. "Experimental evidences of a structural and dynamical transition in fish school," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 367(C), pages 487-493.
    3. Long-Hai Wang & Alexander Ulrich Ernst & Duo An & Ashim Kumar Datta & Boris Epel & Mrignayani Kotecha & Minglin Ma, 2021. "A bioinspired scaffold for rapid oxygenation of cell encapsulation systems," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
    4. Richard P Mann, 2011. "Bayesian Inference for Identifying Interaction Rules in Moving Animal Groups," PLOS ONE, Public Library of Science, vol. 6(8), pages 1-10, August.
    5. Ma, Jian & Song, Wei-guo & Zhang, Jun & Lo, Siu-ming & Liao, Guang-xuan, 2010. "k-Nearest-Neighbor interaction induced self-organized pedestrian counter flow," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(10), pages 2101-2117.
    6. Andrew Hoegh & Frank T. Manen & Mark Haroldson, 2021. "Agent-Based Models for Collective Animal Movement: Proximity-Induced State Switching," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(4), pages 560-579, December.
    7. Chao Jiang & Hong-Yu Luo & Xinpeng Xu & Shuo-Xing Dou & Wei Li & Dongshi Guan & Fangfu Ye & Xiaosong Chen & Ming Guo & Peng-Ye Wang & Hui Li, 2023. "Switch of cell migration modes orchestrated by changes of three-dimensional lamellipodium structure and intracellular diffusion," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    8. Tamás Nepusz & Tamás Vicsek, 2013. "Hierarchical Self-Organization of Non-Cooperating Individuals," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-9, December.
    9. Amos Korman & Efrat Greenwald & Ofer Feinerman, 2014. "Confidence Sharing: An Economic Strategy for Efficient Information Flows in Animal Groups," PLOS Computational Biology, Public Library of Science, vol. 10(10), pages 1-10, October.
    10. Roy Harpaz & Minh Nguyet Nguyen & Armin Bahl & Florian Engert, 2021. "Precise visuomotor transformations underlying collective behavior in larval zebrafish," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    11. Li, Qing & Zhang, Lingwei & Jia, Yongnan & Lu, Tianzhao & Chen, Xiaojie, 2022. "Modeling, analysis, and optimization of three-dimensional restricted visual field metric-free swarms," Chaos, Solitons & Fractals, Elsevier, vol. 157(C).
    12. Amani A. Hariri & Sharon S. Newman & Steven Tan & Dan Mamerow & Alexandra M. Adams & Nicolò Maganzini & Brian L. Zhong & Michael Eisenstein & Alexander R. Dunn & H. Tom Soh, 2022. "Improved immunoassay sensitivity and specificity using single-molecule colocalization," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    13. Mathew Titus & George Hagstrom & James R Watson, 2021. "Unsupervised manifold learning of collective behavior," PLOS Computational Biology, Public Library of Science, vol. 17(2), pages 1-20, February.
    14. Sophie Lardy & Daniel Fortin & Olivier Pays, 2016. "Increased Exploration Capacity Promotes Group Fission in Gregarious Foraging Herbivores," PLOS ONE, Public Library of Science, vol. 11(12), pages 1-14, December.
    15. Fan, Kangqi & Pedrycz, Witold, 2016. "Opinion evolution influenced by informed agents," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 462(C), pages 431-441.
    16. De Rosis, Alessandro, 2014. "Hydrodynamic effects on a predator approaching a group of preys," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 414(C), pages 329-339.
    17. Shao, Zhi-Gang & Yang, Yan-Yan, 2015. "Effective strategies of collective evacuation from an enclosed space," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 427(C), pages 34-39.
    18. Panpan Yang & Maode Yan & Jiacheng Song & Ye Tang, 2019. "Self-Organized Fission-Fusion Control Algorithm for Flocking Systems Based on Intermittent Selective Interaction," Complexity, Hindawi, vol. 2019, pages 1-12, February.
    19. Li, Chenyang & Yang, Yonghui & Jiang, Guanjie & Chen, Xue-Bo, 2024. "Flocking for leader ability effect and formation obstacle avoidance of multi-agents based on different potential functions," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 636(C).
    20. Kong, Decheng & Xue, Kai & Wang, Ping, 2024. "Collective queuing motion of self-propelled particles with leadership and experience," Applied Mathematics and Computation, Elsevier, vol. 476(C).

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39624-w. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.