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A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis

Author

Listed:
  • Tirthankar Mohanty

    (Lund, Lund University)

  • Christofer A. Q. Karlsson

    (Lund, Lund University)

  • Yashuan Chao

    (Lund, Lund University)

  • Erik Malmström

    (Lund, Lund University
    Lund University, Skåne University Hospital)

  • Eleni Bratanis

    (Lund, Lund University)

  • Andrietta Grentzmann

    (Lund, Lund University)

  • Martina Mørch

    (Lund, Lund University)

  • Victor Nizet

    (University of California, San Diego School of Medicine)

  • Lars Malmström

    (Lund, Lund University)

  • Adam Linder

    (Lund, Lund University)

  • Oonagh Shannon

    (Lund, Lund University)

  • Johan Malmström

    (Lund, Lund University)

Abstract

Sepsis is the major cause of mortality across intensive care units globally, yet details of accompanying pathological molecular events remain unclear. This knowledge gap has resulted in ineffective biomarker development and suboptimal treatment regimens to prevent and manage organ dysfunction/damage. Here, we used pharmacoproteomics to score time-dependent treatment impact in a murine Escherichia coli sepsis model after administering beta-lactam antibiotic meropenem (Mem) and/or the immunomodulatory glucocorticoid methylprednisolone (Gcc). Three distinct proteome response patterns were identified, which depended on the underlying proteotype for each organ. Gcc enhanced some positive proteome responses of Mem, including superior reduction of the inflammatory response in kidneys and partial restoration of sepsis-induced metabolic dysfunction. Mem introduced sepsis-independent perturbations in the mitochondrial proteome that Gcc counteracted. We provide a strategy for the quantitative and organotypic assessment of treatment effects of candidate therapies in relationship to dosing, timing, and potential synergistic intervention combinations during sepsis.

Suggested Citation

  • Tirthankar Mohanty & Christofer A. Q. Karlsson & Yashuan Chao & Erik Malmström & Eleni Bratanis & Andrietta Grentzmann & Martina Mørch & Victor Nizet & Lars Malmström & Adam Linder & Oonagh Shannon & , 2023. "A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39269-9
    DOI: 10.1038/s41467-023-39269-9
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    References listed on IDEAS

    as
    1. Erik Malmström & Ola Kilsgård & Simon Hauri & Emanuel Smeds & Heiko Herwald & Lars Malmström & Johan Malmström, 2016. "Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics," Nature Communications, Nature, vol. 7(1), pages 1-10, April.
    2. Alejandro Gómez Toledo & Gregory Golden & Alexandre Rosa Campos & Hector Cuello & James Sorrentino & Nathan Lewis & Nissi Varki & Victor Nizet & Jeffrey W. Smith & Jeffrey D. Esko, 2019. "Proteomic atlas of organ vasculopathies triggered by Staphylococcus aureus sepsis," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
    3. Yingyao Zhou & Bin Zhou & Lars Pache & Max Chang & Alireza Hadj Khodabakhshi & Olga Tanaseichuk & Christopher Benner & Sumit K. Chanda, 2019. "Metascape provides a biologist-oriented resource for the analysis of systems-level datasets," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
    4. Sophia Doll & Martina Dreßen & Philipp E. Geyer & Daniel N. Itzhak & Christian Braun & Stefanie A. Doppler & Florian Meier & Marcus-Andre Deutsch & Harald Lahm & Rüdiger Lange & Markus Krane & Matthia, 2017. "Region and cell-type resolved quantitative proteomic map of the human heart," Nature Communications, Nature, vol. 8(1), pages 1-13, December.
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