Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor
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DOI: 10.1038/s41467-023-38714-z
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- Byrappa Venkatesh & Alison P. Lee & Vydianathan Ravi & Ashish K. Maurya & Michelle M. Lian & Jeremy B. Swann & Yuko Ohta & Martin F. Flajnik & Yoichi Sutoh & Masanori Kasahara & Shawn Hoon & Vamshidha, 2014. "Elephant shark genome provides unique insights into gnathostome evolution," Nature, Nature, vol. 505(7482), pages 174-179, January.
- Kenneth H. Wolfe & Denis C. Shields, 1997. "Molecular evidence for an ancient duplication of the entire yeast genome," Nature, Nature, vol. 387(6634), pages 708-713, June.
- Devin R. Scannell & Kevin P. Byrne & Jonathan L. Gordon & Simon Wong & Kenneth H. Wolfe, 2006. "Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts," Nature, Nature, vol. 440(7082), pages 341-345, March.
- Anthony K. Redmond & Aoife McLysaght, 2021. "Evidence for sponges as sister to all other animals from partitioned phylogenomics with mixture models and recoding," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
- Byrappa Venkatesh & Alison P. Lee & Vydianathan Ravi & Ashish K. Maurya & Michelle M. Lian & Jeremy B. Swann & Yuko Ohta & Martin F. Flajnik & Yoichi Sutoh & Masanori Kasahara & Shawn Hoon & Vamshidha, 2014. "Correction: Corrigendum: Elephant shark genome provides unique insights into gnathostome evolution," Nature, Nature, vol. 513(7519), pages 574-574, September.
- Yoichiro Nakatani & Prashant Shingate & Vydianathan Ravi & Nisha E. Pillai & Aravind Prasad & Aoife McLysaght & Byrappa Venkatesh, 2021. "Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
- Sigbjørn Lien & Ben F. Koop & Simen R. Sandve & Jason R. Miller & Matthew P. Kent & Torfinn Nome & Torgeir R. Hvidsten & Jong S. Leong & David R. Minkley & Aleksey Zimin & Fabian Grammes & Harald Grov, 2016. "The Atlantic salmon genome provides insights into rediploidization," Nature, Nature, vol. 533(7602), pages 200-205, May.
- Adam M. Session & Yoshinobu Uno & Taejoon Kwon & Jarrod A. Chapman & Atsushi Toyoda & Shuji Takahashi & Akimasa Fukui & Akira Hikosaka & Atsushi Suzuki & Mariko Kondo & Simon J. van Heeringen & Ian Qu, 2016. "Genome evolution in the allotetraploid frog Xenopus laevis," Nature, Nature, vol. 538(7625), pages 336-343, October.
- Peng Xu & Jian Xu & Guangjian Liu & Lin Chen & Zhixiong Zhou & Wenzhu Peng & Yanliang Jiang & Zixia Zhao & Zhiying Jia & Yonghua Sun & Yidi Wu & Baohua Chen & Fei Pu & Jianxin Feng & Jing Luo & Jing C, 2019. "The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
- Yi-Cun Chen & Zhen Li & Yun-Xiao Zhao & Ming Gao & Jie-Yu Wang & Ke-Wei Liu & Xue Wang & Li-Wen Wu & Yu-Lian Jiao & Zi-Long Xu & Wen-Guang He & Qi-Yan Zhang & Chieh-Kai Liang & Yu-Yun Hsiao & Di-Yang , 2020. "The Litsea genome and the evolution of the laurel family," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
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