Transposon signatures of allopolyploid genome evolution
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DOI: 10.1038/s41467-023-38560-z
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- Sateesh Kagale & Chushin Koh & John Nixon & Venkatesh Bollina & Wayne E. Clarke & Reetu Tuteja & Charles Spillane & Stephen J. Robinson & Matthew G. Links & Carling Clarke & Erin E. Higgins & Terry Hu, 2014. "The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure," Nature Communications, Nature, vol. 5(1), pages 1-11, September.
- Sean P. Gordon & Bruno Contreras-Moreira & Daniel P. Woods & David L. Des Marais & Diane Burgess & Shengqiang Shu & Christoph Stritt & Anne C. Roulin & Wendy Schackwitz & Ludmila Tyler & Joel Martin &, 2017. "Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure," Nature Communications, Nature, vol. 8(1), pages 1-13, December.
- Guohong Albert Wu & Chikatoshi Sugimoto & Hideyasu Kinjo & Chika Azama & Fumimasa Mitsube & Manuel Talon & Frederick G. Gmitter & Daniel S. Rokhsar, 2021. "Diversification of mandarin citrus by hybrid speciation and apomixis," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
- Peng Xu & Jian Xu & Guangjian Liu & Lin Chen & Zhixiong Zhou & Wenzhu Peng & Yanliang Jiang & Zixia Zhao & Zhiying Jia & Yonghua Sun & Yidi Wu & Baohua Chen & Fei Pu & Jianxin Feng & Jing Luo & Jing C, 2019. "The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
- Robert VanBuren & Ching Man Wai & Xuewen Wang & Jeremy Pardo & Alan E. Yocca & Hao Wang & Srinivasa R. Chaluvadi & Guomin Han & Douglas Bryant & Patrick P. Edger & Joachim Messing & Mark E. Sorrells &, 2020. "Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
- Therese Mitros & Adam M. Session & Brandon T. James & Guohong Albert Wu & Mohammad B. Belaffif & Lindsay V. Clark & Shengqiang Shu & Hongxu Dong & Adam Barling & Jessica R. Holmes & Jessica E. Mattick, 2020. "Genome biology of the paleotetraploid perennial biomass crop Miscanthus," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
- John E. Bowers & Brad A. Chapman & Junkang Rong & Andrew H. Paterson, 2003. "Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events," Nature, Nature, vol. 422(6930), pages 433-438, March.
- John T. Lovell & Alice H. MacQueen & Sujan Mamidi & Jason Bonnette & Jerry Jenkins & Joseph D. Napier & Avinash Sreedasyam & Adam Healey & Adam Session & Shengqiang Shu & Kerrie Barry & Stacy Bonos & , 2021. "Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass," Nature, Nature, vol. 590(7846), pages 438-444, February.
- Sigbjørn Lien & Ben F. Koop & Simen R. Sandve & Jason R. Miller & Matthew P. Kent & Torfinn Nome & Torgeir R. Hvidsten & Jong S. Leong & David R. Minkley & Aleksey Zimin & Fabian Grammes & Harald Grov, 2016. "The Atlantic salmon genome provides insights into rediploidization," Nature, Nature, vol. 533(7602), pages 200-205, May.
- Adam M. Session & Yoshinobu Uno & Taejoon Kwon & Jarrod A. Chapman & Atsushi Toyoda & Shuji Takahashi & Akimasa Fukui & Akira Hikosaka & Atsushi Suzuki & Mariko Kondo & Simon J. van Heeringen & Ian Qu, 2016. "Genome evolution in the allotetraploid frog Xenopus laevis," Nature, Nature, vol. 538(7625), pages 336-343, October.
- Sean P. Gordon & Bruno Contreras-Moreira & Joshua J. Levy & Armin Djamei & Angelika Czedik-Eysenberg & Virginia S. Tartaglio & Adam Session & Joel Martin & Amy Cartwright & Andrew Katz & Vasanth R. Si, 2020. "Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors," Nature Communications, Nature, vol. 11(1), pages 1-16, December.
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