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The Litsea genome and the evolution of the laurel family

Author

Listed:
  • Yi-Cun Chen

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Zhen Li

    (Ghent University
    VIB Center for Plant Systems Biology, VIB)

  • Yun-Xiao Zhao

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Ming Gao

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Jie-Yu Wang

    (Fujian Agriculture and Forestry University
    South China Agricultural University)

  • Ke-Wei Liu

    (Tsinghua University
    Tsinghua University
    Tsinghua-Berkeley Shenzhen Institute (TBSI))

  • Xue Wang

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Li-Wen Wu

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Yu-Lian Jiao

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Zi-Long Xu

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Wen-Guang He

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Qi-Yan Zhang

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

  • Chieh-Kai Liang

    (National Cheng Kung University)

  • Yu-Yun Hsiao

    (National Cheng Kung University)

  • Di-Yang Zhang

    (Fujian Agriculture and Forestry University)

  • Si-Ren Lan

    (Fujian Agriculture and Forestry University)

  • Laiqiang Huang

    (Tsinghua University
    Tsinghua University
    Tsinghua-Berkeley Shenzhen Institute (TBSI))

  • Wei Xu

    (Novogene Bioinformatics Institute)

  • Wen-Chieh Tsai

    (National Cheng Kung University
    National Cheng Kung University
    National Cheng Kung University)

  • Zhong-Jian Liu

    (Chinese Academy of Forestry
    Fujian Agriculture and Forestry University
    South China Agricultural University
    Tsinghua University)

  • Yves Peer

    (Ghent University
    VIB Center for Plant Systems Biology, VIB
    University of Pretoria
    Nanjing Agricultural University)

  • Yang-Dong Wang

    (Chinese Academy of Forestry
    Chinese Academy of Forestry)

Abstract

The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents.

Suggested Citation

  • Yi-Cun Chen & Zhen Li & Yun-Xiao Zhao & Ming Gao & Jie-Yu Wang & Ke-Wei Liu & Xue Wang & Li-Wen Wu & Yu-Lian Jiao & Zi-Long Xu & Wen-Guang He & Qi-Yan Zhang & Chieh-Kai Liang & Yu-Yun Hsiao & Di-Yang , 2020. "The Litsea genome and the evolution of the laurel family," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:11:y:2020:i:1:d:10.1038_s41467-020-15493-5
    DOI: 10.1038/s41467-020-15493-5
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    Cited by:

    1. Pierre Genest & Léo Trespeuch, 2022. "Internet users’ perception about the impact of the pandemic on sports sponsorship [La perception des internautes face à l'impact de la pandémie sur le mécénat sportif]," Working Papers hal-03945701, HAL.
    2. Xing Guo & Dongming Fang & Sunil Kumar Sahu & Shuai Yang & Xuanmin Guang & Ryan Folk & Stephen A. Smith & Andre S. Chanderbali & Sisi Chen & Min Liu & Ting Yang & Shouzhou Zhang & Xin Liu & Xun Xu & P, 2021. "Chloranthus genome provides insights into the early diversification of angiosperms," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    3. Anthony K. Redmond & Dearbhaile Casey & Manu Kumar Gundappa & Daniel J. Macqueen & Aoife McLysaght, 2023. "Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    4. Jianxiang Ma & Pengchuan Sun & Dandan Wang & Zhenyue Wang & Jiao Yang & Ying Li & Wenjie Mu & Renping Xu & Ying Wu & Congcong Dong & Nawal Shrestha & Jianquan Liu & Yongzhi Yang, 2021. "The Chloranthus sessilifolius genome provides insight into early diversification of angiosperms," Nature Communications, Nature, vol. 12(1), pages 1-13, December.

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