Unzipped chromosome-level genomes reveal allopolyploid nematode origin pattern as unreduced gamete hybridization
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DOI: 10.1038/s41467-023-42700-w
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- Anna M. Selmecki & Yosef E. Maruvka & Phillip A. Richmond & Marie Guillet & Noam Shoresh & Amber L. Sorenson & Subhajyoti De & Roy Kishony & Franziska Michor & Robin Dowell & David Pellman, 2015. "Polyploidy can drive rapid adaptation in yeast," Nature, Nature, vol. 519(7543), pages 349-352, March.
- Simon Gemble & René Wardenaar & Kristina Keuper & Nishit Srivastava & Maddalena Nano & Anne-Sophie Macé & Andréa E. Tijhuis & Sara Vanessa Bernhard & Diana C. J. Spierings & Anthony Simon & Oumou Goun, 2022. "Author Correction: Genetic instability from a single S phase after whole-genome duplication," Nature, Nature, vol. 608(7923), pages 27-27, August.
- Robert L. Dilley & Priyanka Verma & Nam Woo Cho & Harrison D. Winters & Anne R. Wondisford & Roger A. Greenberg, 2016. "Break-induced telomere synthesis underlies alternative telomere maintenance," Nature, Nature, vol. 539(7627), pages 54-58, November.
- Mark L. Blaxter & Paul De Ley & James R. Garey & Leo X. Liu & Patsy Scheldeman & Andy Vierstraete & Jacques R. Vanfleteren & Laura Y. Mackey & Mark Dorris & Linda M. Frisse & J. T. Vida & W. Kelley Th, 1998. "A molecular evolutionary framework for the phylum Nematoda," Nature, Nature, vol. 392(6671), pages 71-75, March.
- Simon Gemble & René Wardenaar & Kristina Keuper & Nishit Srivastava & Maddalena Nano & Anne-Sophie Macé & Andréa E. Tijhuis & Sara Vanessa Bernhard & Diana C. J. Spierings & Anthony Simon & Oumou Goun, 2022. "Genetic instability from a single S phase after whole-genome duplication," Nature, Nature, vol. 604(7904), pages 146-151, April.
- Adam M. Session & Yoshinobu Uno & Taejoon Kwon & Jarrod A. Chapman & Atsushi Toyoda & Shuji Takahashi & Akimasa Fukui & Akira Hikosaka & Atsushi Suzuki & Mariko Kondo & Simon J. van Heeringen & Ian Qu, 2016. "Genome evolution in the allotetraploid frog Xenopus laevis," Nature, Nature, vol. 538(7625), pages 336-343, October.
- Sabrina Dietz & Miguel Vasconcelos Almeida & Emily Nischwitz & Jan Schreier & Nikenza Viceconte & Albert Fradera-Sola & Christian Renz & Alejandro Ceron-Noriega & Helle D. Ulrich & Dennis Kappei & Ren, 2021. "The double-stranded DNA-binding proteins TEBP-1 and TEBP-2 form a telomeric complex with POT-1," Nature Communications, Nature, vol. 12(1), pages 1-20, December.
- Emily Crane & Qian Bian & Rachel Patton McCord & Bryan R. Lajoie & Bayly S. Wheeler & Edward J. Ralston & Satoru Uzawa & Job Dekker & Barbara J. Meyer, 2015. "Condensin-driven remodelling of X chromosome topology during dosage compensation," Nature, Nature, vol. 523(7559), pages 240-244, July.
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