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Ancient marine sediment DNA reveals diatom transition in Antarctica

Author

Listed:
  • Linda Armbrecht

    (University of Tasmania
    The University of Adelaide)

  • Michael E. Weber

    (University of Bonn, Institute for Geosciences, Department of Geochemistry and Petrology)

  • Maureen E. Raymo

    (Columbia University)

  • Victoria L. Peck

    (British Antarctic Survey)

  • Trevor Williams

    (Texas A&M University)

  • Jonathan Warnock

    (Indiana University of Pennsylvania)

  • Yuji Kato

    (University of Tsukuba)

  • Iván Hernández-Almeida

    (ETH Zürich, Geological Institute, Department of Earth Science)

  • Frida Hoem

    (Utrecht University)

  • Brendan Reilly

    (University of California San Diego)

  • Sidney Hemming

    (Columbia University)

  • Ian Bailey

    (Camborne School of Mines, University of Exeter)

  • Yasmina M. Martos

    (Planetary Magnetospheres Laboratory (695), NASA Goddard Space Flight Center
    University of Maryland College Park)

  • Marcus Gutjahr

    (GEOMAR Helmholtz Centre for Ocean Research Kiel)

  • Vincent Percuoco

    (Texas A&M University)

  • Claire Allen

    (British Antarctic Survey)

  • Stefanie Brachfeld

    (Montclair State University)

  • Fabricio G. Cardillo

    (Servicio de Hidrografia Naval)

  • Zhiheng Du

    (Chinese Academy of Sciences)

  • Gerson Fauth

    (University of Vale do Rio dos Sinos)

  • Chris Fogwill

    (Cranfield University)

  • Marga Garcia

    (Cadiz Oceanographic Center (IEO-CSIC))

  • Anna Glüder

    (Oregon State University)

  • Michelle Guitard

    (University of South Florida)

  • Ji-Hwan Hwang

    (Korea Basic Science Institute)

  • Mutsumi Iizuka

    (Tokyo City University)

  • Bridget Kenlee

    (University of California Riverside)

  • Suzanne O’Connell

    (Wesleyan University)

  • Lara F. Pérez

    (Geological Survey of Denmark and Greenland, Department of Marine Geology)

  • Thomas A. Ronge

    (Helmholtz Center for Polar and Marine Research)

  • Osamu Seki

    (Hokkaido University)

  • Lisa Tauxe

    (University of California San Diego)

  • Shubham Tripathi

    (Ministry of Earth Sciences)

  • Xufeng Zheng

    (Hainan University)

Abstract

Antarctica is one of the most vulnerable regions to climate change on Earth and studying the past and present responses of this polar marine ecosystem to environmental change is a matter of urgency. Sedimentary ancient DNA (sedaDNA) analysis can provide such insights into past ecosystem-wide changes. Here we present authenticated (through extensive contamination control and sedaDNA damage analysis) metagenomic marine eukaryote sedaDNA from the Scotia Sea region acquired during IODP Expedition 382. We also provide a marine eukaryote sedaDNA record of ~1 Mio. years and diatom and chlorophyte sedaDNA dating back to ~540 ka (using taxonomic marker genes SSU, LSU, psbO). We find evidence of warm phases being associated with high relative diatom abundance, and a marked transition from diatoms comprising

Suggested Citation

  • Linda Armbrecht & Michael E. Weber & Maureen E. Raymo & Victoria L. Peck & Trevor Williams & Jonathan Warnock & Yuji Kato & Iván Hernández-Almeida & Frida Hoem & Brendan Reilly & Sidney Hemming & Ian , 2022. "Ancient marine sediment DNA reveals diatom transition in Antarctica," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33494-4
    DOI: 10.1038/s41467-022-33494-4
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    References listed on IDEAS

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    1. Daniel H Huson & Sina Beier & Isabell Flade & Anna Górska & Mohamed El-Hadidi & Suparna Mitra & Hans-Joachim Ruscheweyh & Rewati Tappu, 2016. "MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data," PLOS Computational Biology, Public Library of Science, vol. 12(6), pages 1-12, June.
    2. N. R. Golledge & L. Menviel & L. Carter & C. J. Fogwill & M. H. England & G. Cortese & R. H. Levy, 2014. "Antarctic contribution to meltwater pulse 1A from reduced Southern Ocean overturning," Nature Communications, Nature, vol. 5(1), pages 1-10, December.
    3. M. E. Weber & P. U. Clark & G. Kuhn & A. Timmermann & D. Sprenk & R. Gladstone & X. Zhang & G. Lohmann & L. Menviel & M. O. Chikamoto & T. Friedrich & C. Ohlwein, 2014. "Millennial-scale variability in Antarctic ice-sheet discharge during the last deglaciation," Nature, Nature, vol. 510(7503), pages 134-138, June.
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    Cited by:

    1. M. S. Clark & J. I. Hoffman & L. S. Peck & L. Bargelloni & D. Gande & C. Havermans & B. Meyer & T. Patarnello & T. Phillips & K. R. Stoof-Leichsenring & D. L. J. Vendrami & A. Beck & G. Collins & M. W, 2023. "Multi-omics for studying and understanding polar life," Nature Communications, Nature, vol. 14(1), pages 1-12, December.

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