IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v13y2022i1d10.1038_s41467-022-32594-5.html
   My bibliography  Save this article

Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs

Author

Listed:
  • Arvind Kumar

    (Case Western Reserve University)

  • Kayla Kindig

    (Case Western Reserve University)

  • Shanlin Rao

    (University of Oxford)

  • Afroditi-Maria Zaki

    (University of Oxford)

  • Sandip Basak

    (Case Western Reserve University)

  • Mark S. P. Sansom

    (University of Oxford)

  • Philip C. Biggin

    (University of Oxford)

  • Sudha Chakrapani

    (Case Western Reserve University
    Case Western Reserve University
    Case Western Reserve University)

Abstract

Nociception and motor coordination are critically governed by glycine receptor (GlyR) function at inhibitory synapses. Consequentially, GlyRs are attractive targets in the management of chronic pain and in the treatment of several neurological disorders. High-resolution mechanistic details of GlyR function and its modulation are just emerging. While it has been known that cannabinoids such as Δ9-tetrahydrocannabinol (THC), the principal psychoactive constituent in marijuana, potentiate GlyR in the therapeutically relevant concentration range, the molecular mechanism underlying this effect is still not understood. Here, we present Cryo-EM structures of full-length GlyR reconstituted into lipid nanodisc in complex with THC under varying concentrations of glycine. The GlyR-THC complexes are captured in multiple conformational states that reveal the basis for THC-mediated potentiation, manifested as different extents of opening at the level of the channel pore. Taken together, these structural findings, combined with molecular dynamics simulations and functional analysis, provide insights into the potential THC binding site and the allosteric coupling to the channel pore.

Suggested Citation

  • Arvind Kumar & Kayla Kindig & Shanlin Rao & Afroditi-Maria Zaki & Sandip Basak & Mark S. P. Sansom & Philip C. Biggin & Sudha Chakrapani, 2022. "Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-32594-5
    DOI: 10.1038/s41467-022-32594-5
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-022-32594-5
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-022-32594-5?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Marc Gielen & Philip Thomas & Trevor G. Smart, 2015. "The desensitization gate of inhibitory Cys-loop receptors," Nature Communications, Nature, vol. 6(1), pages 1-10, November.
    2. Paul S. Miller & A. Radu Aricescu, 2014. "Crystal structure of a human GABAA receptor," Nature, Nature, vol. 512(7514), pages 270-275, August.
    3. Arvind Kumar & Sandip Basak & Shanlin Rao & Yvonne Gicheru & Megan L. Mayer & Mark S. P. Sansom & Sudha Chakrapani, 2020. "Mechanisms of activation and desensitization of full-length glycine receptor in lipid nanodiscs," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    4. Jie Yu & Prashant Rao & Sarah Clark & Jaba Mitra & Taekjip Ha & Eric Gouaux, 2021. "Hippocampal AMPA receptor assemblies and mechanism of allosteric inhibition," Nature, Nature, vol. 594(7863), pages 448-453, June.
    5. Xin Huang & Hao Chen & Klaus Michelsen & Stephen Schneider & Paul L. Shaffer, 2015. "Crystal structure of human glycine receptor-α3 bound to antagonist strychnine," Nature, Nature, vol. 526(7572), pages 277-280, October.
    6. S. John Mihic & Qing Ye & Marilee J. Wick & Vladimir V. Koltchine & Matthew D. Krasowski & Suzanne E. Finn & Maria Paola Mascia & C. Fernando Valenzuela & Kirsten K. Hanson & Eric P. Greenblatt & R. A, 1997. "Sites of alcohol and volatile anaesthetic action on GABAA and glycine receptors," Nature, Nature, vol. 389(6649), pages 385-389, September.
    7. Sandip Basak & Yvonne Gicheru & Shanlin Rao & Mark S. P. Sansom & Sudha Chakrapani, 2018. "Cryo-EM reveals two distinct serotonin-bound conformations of full-length 5-HT3A receptor," Nature, Nature, vol. 563(7730), pages 270-274, November.
    8. Simonas Masiulis & Rooma Desai & Tomasz Uchański & Itziar Serna Martin & Duncan Laverty & Dimple Karia & Tomas Malinauskas & Jasenko Zivanov & Els Pardon & Abhay Kotecha & Jan Steyaert & Keith W. Mill, 2019. "Author Correction: GABAA receptor signalling mechanisms revealed by structural pharmacology," Nature, Nature, vol. 566(7744), pages 8-8, February.
    9. Sandip Basak & Yvonne Gicheru & Amrita Samanta & Sudheer Kumar Molugu & Wei Huang & Maria la de Fuente & Taylor Hughes & Derek J. Taylor & Marvin T. Nieman & Vera Moiseenkova-Bell & Sudha Chakrapani, 2018. "Cryo-EM structure of 5-HT3A receptor in its resting conformation," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    10. Simonas Masiulis & Rooma Desai & Tomasz Uchański & Itziar Serna Martin & Duncan Laverty & Dimple Karia & Tomas Malinauskas & Jasenko Zivanov & Els Pardon & Abhay Kotecha & Jan Steyaert & Keith W. Mill, 2019. "GABAA receptor signalling mechanisms revealed by structural pharmacology," Nature, Nature, vol. 565(7740), pages 454-459, January.
    11. Juan Du & Wei Lü & Shenping Wu & Yifan Cheng & Eric Gouaux, 2015. "Glycine receptor mechanism elucidated by electron cryo-microscopy," Nature, Nature, vol. 526(7572), pages 224-229, October.
    12. Shaotong Zhu & Colleen M. Noviello & Jinfeng Teng & Richard M. Walsh & Jeong Joo Kim & Ryan E. Hibbs, 2018. "Structure of a human synaptic GABAA receptor," Nature, Nature, vol. 559(7712), pages 67-72, July.
    13. Jeong Joo Kim & Anant Gharpure & Jinfeng Teng & Yuxuan Zhuang & Rebecca J. Howard & Shaotong Zhu & Colleen M. Noviello & Richard M. Walsh & Erik Lindahl & Ryan E. Hibbs, 2020. "Shared structural mechanisms of general anaesthetics and benzodiazepines," Nature, Nature, vol. 585(7824), pages 303-308, September.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Vikram Dalal & Mark J. Arcario & John T. Petroff & Brandon K. Tan & Noah M. Dietzen & Michael J. Rau & James A. J. Fitzpatrick & Grace Brannigan & Wayland W. L. Cheng, 2024. "Lipid nanodisc scaffold and size alter the structure of a pentameric ligand-gated ion channel," Nature Communications, Nature, vol. 15(1), pages 1-10, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Nikhil Bharambe & Zhuowen Li & David Seiferth & Asha Manikkoth Balakrishna & Philip C. Biggin & Sandip Basak, 2024. "Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    2. Weronika Chojnacka & Jinfeng Teng & Jeong Joo Kim & Anders A. Jensen & Ryan E. Hibbs, 2024. "Structural insights into GABAA receptor potentiation by Quaalude," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    3. Eric Gibbs & Emily Klemm & David Seiferth & Arvind Kumar & Serban L. Ilca & Philip C. Biggin & Sudha Chakrapani, 2023. "Conformational transitions and allosteric modulation in a heteromeric glycine receptor," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    4. Dagimhiwat H. Legesse & Chen Fan & Jinfeng Teng & Yuxuan Zhuang & Rebecca J. Howard & Colleen M. Noviello & Erik Lindahl & Ryan E. Hibbs, 2023. "Structural insights into opposing actions of neurosteroids on GABAA receptors," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    5. Xiaofen Liu & Weiwei Wang, 2023. "Asymmetric gating of a human hetero-pentameric glycine receptor," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    6. Vikram Dalal & Mark J. Arcario & John T. Petroff & Brandon K. Tan & Noah M. Dietzen & Michael J. Rau & James A. J. Fitzpatrick & Grace Brannigan & Wayland W. L. Cheng, 2024. "Lipid nanodisc scaffold and size alter the structure of a pentameric ligand-gated ion channel," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    7. Shaotong Zhu & Akshay Sridhar & Jinfeng Teng & Rebecca J. Howard & Erik Lindahl & Ryan E. Hibbs, 2022. "Structural and dynamic mechanisms of GABAA receptor modulators with opposing activities," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    8. Marie S. Prevost & Nathalie Barilone & Gabrielle Dejean de la Bâtie & Stéphanie Pons & Gabriel Ayme & Patrick England & Marc Gielen & François Bontems & Gérard Pehau-Arnaudet & Uwe Maskos & Pierre , 2023. "An original potentiating mechanism revealed by the cryo-EM structures of the human α7 nicotinic receptor in complex with nanobodies," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    9. Emma Rie Olander & Dieter Janzen & Carmen Villmann & Anders A Jensen, 2020. "Comparison of biophysical properties of α1β2 and α3β2 GABAA receptors in whole-cell patch-clamp electrophysiological recordings," PLOS ONE, Public Library of Science, vol. 15(6), pages 1-13, June.
    10. Maegan M Weltzin & Andrew A George & Ronald J Lukas & Paul Whiteaker, 2021. "Sleep-related hypermotor epilepsy associated mutations uncover important kinetic roles of α4β2- nicotinic acetylcholine receptor intracellular structures," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-38, March.
    11. John T. Petroff & Noah M. Dietzen & Ezry Santiago-McRae & Brett Deng & Maya S. Washington & Lawrence J. Chen & K. Trent Moreland & Zengqin Deng & Michael Rau & James A. J. Fitzpatrick & Peng Yuan & Th, 2022. "Open-channel structure of a pentameric ligand-gated ion channel reveals a mechanism of leaflet-specific phospholipid modulation," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    12. Heng Liu & Dapeng Sun & Alexander Myasnikov & Marjorie Damian & Jean-Louis Baneres & Ji Sun & Cheng Zhang, 2021. "Structural basis of human ghrelin receptor signaling by ghrelin and the synthetic agonist ibutamoren," Nature Communications, Nature, vol. 12(1), pages 1-8, December.
    13. Nathan L. Absalom & Vivian W. Y. Liao & Katrine M. H. Johannesen & Elena Gardella & Julia Jacobs & Gaetan Lesca & Zeynep Gokce-Samar & Alexis Arzimanoglou & Shimriet Zeidler & Pasquale Striano & Pierr, 2022. "Gain-of-function and loss-of-function GABRB3 variants lead to distinct clinical phenotypes in patients with developmental and epileptic encephalopathies," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    14. Umang Goswami & Md Mahfuzur Rahman & Jinfeng Teng & Ryan E. Hibbs, 2023. "Structural interplay of anesthetics and paralytics on muscle nicotinic receptors," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    15. Vasyl Bondarenko & Marta M. Wells & Qiang Chen & Tommy S. Tillman & Kevin Singewald & Matthew J. Lawless & Joel Caporoso & Nicole Brandon & Jonathan A. Coleman & Sunil Saxena & Erik Lindahl & Yan Xu &, 2022. "Structures of highly flexible intracellular domain of human α7 nicotinic acetylcholine receptor," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    16. Danyang Zhang & Remigijus Lape & Saher A. Shaikh & Bianka K. Kohegyi & Jake F. Watson & Ondrej Cais & Terunaga Nakagawa & Ingo H. Greger, 2023. "Modulatory mechanisms of TARP γ8-selective AMPA receptor therapeutics," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    17. Mackenzie J. Thompson & Farid Mansoub Bekarkhanechi & Anna Ananchenko & Hugues Nury & John E. Baenziger, 2024. "A release of local subunit conformational heterogeneity underlies gating in a muscle nicotinic acetylcholine receptor," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    18. Andrew Muenks & Samantha Zepeda & Guangfeng Zhou & David Veesler & Frank DiMaio, 2023. "Automatic and accurate ligand structure determination guided by cryo-electron microscopy maps," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    19. Yingfeng Tao & Xiaoliu Zhou & Leqiang Sun & Da Lin & Huaiyuan Cai & Xi Chen & Wei Zhou & Bing Yang & Zhe Hu & Jing Yu & Jing Zhang & Xiaoqing Yang & Fang Yang & Bang Shen & Wenbao Qi & Zhenfang Fu & J, 2023. "Highly efficient and robust π-FISH rainbow for multiplexed in situ detection of diverse biomolecules," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    20. Grace D. Galles & Daniel T. Infield & Colin J. Clark & Marcus L. Hemshorn & Shivani Manikandan & Frederico Fazan & Ali Rasouli & Emad Tajkhorshid & Jason D. Galpin & Richard B. Cooley & Ryan A. Mehl &, 2023. "Tuning phenylalanine fluorination to assess aromatic contributions to protein function and stability in cells," Nature Communications, Nature, vol. 14(1), pages 1-12, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-32594-5. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.