Engineering a niche supporting hematopoietic stem cell development using integrated single-cell transcriptomics
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DOI: 10.1038/s41467-022-28781-z
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- Leonor Gama-Norton & Eva Ferrando & Cristina Ruiz-Herguido & Zhenyi Liu & Jordi Guiu & Abul B. M. M. K. Islam & Sung-Uk Lee & Minhong Yan & Cynthia J. Guidos & Nuria López-Bigas & Takahiro Maeda & Llu, 2015. "Notch signal strength controls cell fate in the haemogenic endothelium," Nature Communications, Nature, vol. 6(1), pages 1-12, December.
- Phong Dang Nguyen & Georgina Elizabeth Hollway & Carmen Sonntag & Lee Barry Miles & Thomas Edward Hall & Silke Berger & Kristine Joy Fernandez & David Baruch Gurevich & Nicholas James Cole & Sara Alae, 2014. "Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1," Nature, Nature, vol. 512(7514), pages 314-318, August.
- Jordan A. Ramilowski & Tatyana Goldberg & Jayson Harshbarger & Edda Kloppmann & Marina Lizio & Venkata P. Satagopam & Masayoshi Itoh & Hideya Kawaji & Piero Carninci & Burkhard Rost & Alistair R. R. F, 2015. "A draft network of ligand–receptor-mediated multicellular signalling in human," Nature Communications, Nature, vol. 6(1), pages 1-12, November.
- Vincenzo Calvanese & Andrew T. Nguyen & Timothy J. Bolan & Anastasia Vavilina & Trent Su & Lydia K. Lee & Yanling Wang & Fides D. Lay & Mattias Magnusson & Gay M. Crooks & Siavash K. Kurdistani & Hann, 2019. "MLLT3 governs human haematopoietic stem-cell self-renewal and engraftment," Nature, Nature, vol. 576(7786), pages 281-286, December.
- Chloé S. Baron & Lennart Kester & Anna Klaus & Jean-Charles Boisset & Roshana Thambyrajah & Laurent Yvernogeau & Valérie Kouskoff & Georges Lacaud & Alexander Oudenaarden & Catherine Robin, 2018. "Single-cell transcriptomics reveal the dynamic of haematopoietic stem cell production in the aorta," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
- Melih Acar & Kiranmai S. Kocherlakota & Malea M. Murphy & James G. Peyer & Hideyuki Oguro & Christopher N. Inra & Christabel Jaiyeola & Zhiyu Zhao & Katherine Luby-Phelps & Sean J. Morrison, 2015. "Deep imaging of bone marrow shows non-dividing stem cells are mainly perisinusoidal," Nature, Nature, vol. 526(7571), pages 126-130, October.
- Morgan Oatley & Özge Vargel Bölükbası & Valentine Svensson & Maya Shvartsman & Kerstin Ganter & Katharina Zirngibl & Polina V. Pavlovich & Vladislava Milchevskaya & Vladimira Foteva & Kedar N. Nataraj, 2020. "Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition," Nature Communications, Nature, vol. 11(1), pages 1-18, December.
- Joana Carrelha & Yiran Meng & Laura M. Kettyle & Tiago C. Luis & Ruggiero Norfo & Verónica Alcolea & Hanane Boukarabila & Francesca Grasso & Adriana Gambardella & Amit Grover & Kari Högstrand & Allegr, 2018. "Hierarchically related lineage-restricted fates of multipotent haematopoietic stem cells," Nature, Nature, vol. 554(7690), pages 106-111, February.
- Carlos O. Lizama & John S. Hawkins & Christopher E. Schmitt & Frank L. Bos & Joan P. Zape & Kelly M. Cautivo & Hugo Borges Pinto & Alexander M. Rhyner & Hui Yu & Mary E. Donohoe & Joshua D. Wythe & An, 2015. "Repression of arterial genes in hemogenic endothelium is sufficient for haematopoietic fate acquisition," Nature Communications, Nature, vol. 6(1), pages 1-10, November.
- Alejandra Sanjuan-Pla & Iain C. Macaulay & Christina T. Jensen & Petter S. Woll & Tiago C. Luis & Adam Mead & Susan Moore & Cintia Carella & Sahoko Matsuoka & Tiphaine Bouriez Jones & Onima Chowdhury , 2013. "Platelet-biased stem cells reside at the apex of the haematopoietic stem-cell hierarchy," Nature, Nature, vol. 502(7470), pages 232-236, October.
- Monica Corada & Fabrizio Orsenigo & Marco Francesco Morini & Mara Elena Pitulescu & Ganesh Bhat & Daniel Nyqvist & Ferruccio Breviario & Valentina Conti & Anais Briot & M. Luisa Iruela-Arispe & Ralf H, 2013. "Sox17 is indispensable for acquisition and maintenance of arterial identity," Nature Communications, Nature, vol. 4(1), pages 1-14, December.
- Céline Souilhol & Christèle Gonneau & Javier G. Lendinez & Antoniana Batsivari & Stanislav Rybtsov & Heather Wilson & Lucia Morgado-Palacin & David Hills & Samir Taoudi & Jennifer Antonchuk & Suling Z, 2016. "Inductive interactions mediated by interplay of asymmetric signalling underlie development of adult haematopoietic stem cells," Nature Communications, Nature, vol. 7(1), pages 1-13, April.
- Fan Zhou & Xianlong Li & Weili Wang & Ping Zhu & Jie Zhou & Wenyan He & Meng Ding & Fuyin Xiong & Xiaona Zheng & Zhuan Li & Yanli Ni & Xiaohuan Mu & Lu Wen & Tao Cheng & Yu Lan & Weiping Yuan & Fuchou, 2016. "Tracing haematopoietic stem cell formation at single-cell resolution," Nature, Nature, vol. 533(7604), pages 487-492, May.
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