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Self assembling cluster crystals from DNA based dendritic nanostructures

Author

Listed:
  • Emmanuel Stiakakis

    (Institute of Biological Information Processing (IBI-4))

  • Niklas Jung

    (University of Siegen)

  • Nataša Adžić

    (University of Vienna)

  • Taras Balandin

    (Institute of Biological Information Processing (IBI-7))

  • Emmanuel Kentzinger

    (Forschungszentrum Jülich)

  • Ulrich Rücker

    (Forschungszentrum Jülich)

  • Ralf Biehl

    (Forschungszentrum Jülich)

  • Jan K. G. Dhont

    (Institute of Biological Information Processing (IBI-4)
    Universitätsstraße 1)

  • Ulrich Jonas

    (University of Siegen)

  • Christos N. Likos

    (University of Vienna)

Abstract

Cluster crystals are periodic structures with lattice sites occupied by several, overlapping building blocks, featuring fluctuating site occupancy, whose expectation value depends on thermodynamic conditions. Their assembly from atomic or mesoscopic units is long-sought-after, but its experimental realization still remains elusive. Here, we show the existence of well-controlled soft matter cluster crystals. We fabricate dendritic-linear-dendritic triblock composed of a thermosensitive water-soluble polymer and nanometer-scale all-DNA dendrons of the first and second generation. Conclusive small-angle X-ray scattering (SAXS) evidence reveals that solutions of these triblock at sufficiently high concentrations undergo a reversible phase transition from a cluster fluid to a body-centered cubic (BCC) cluster crystal with density-independent lattice spacing, through alteration of temperature. Moreover, a rich concentration-temperature phase diagram demonstrates the emergence of various ordered nanostructures, including BCC cluster crystals, birefringent cluster crystals, as well as hexagonal phases and cluster glass-like kinetically arrested states at high densities.

Suggested Citation

  • Emmanuel Stiakakis & Niklas Jung & Nataša Adžić & Taras Balandin & Emmanuel Kentzinger & Ulrich Rücker & Ralf Biehl & Jan K. G. Dhont & Ulrich Jonas & Christos N. Likos, 2021. "Self assembling cluster crystals from DNA based dendritic nanostructures," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27412-3
    DOI: 10.1038/s41467-021-27412-3
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    References listed on IDEAS

    as
    1. Michal Walczak & Ryan A. Brady & Leonardo Mancini & Claudia Contini & Roger Rubio-Sánchez & William T. Kaufhold & Pietro Cicuta & Lorenzo Michele, 2021. "Responsive core-shell DNA particles trigger lipid-membrane disruption and bacteria entrapment," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    2. Anna Stradner & Helen Sedgwick & Frédéric Cardinaux & Wilson C. K. Poon & Stefan U. Egelhaaf & Peter Schurtenberger, 2004. "Equilibrium cluster formation in concentrated protein solutions and colloids," Nature, Nature, vol. 432(7016), pages 492-495, November.
    3. Kristian Baumann & Christine Guerlin & Ferdinand Brennecke & Tilman Esslinger, 2010. "Dicke quantum phase transition with a superfluid gas in an optical cavity," Nature, Nature, vol. 464(7293), pages 1301-1306, April.
    4. Julian Léonard & Andrea Morales & Philip Zupancic & Tilman Esslinger & Tobias Donner, 2017. "Supersolid formation in a quantum gas breaking a continuous translational symmetry," Nature, Nature, vol. 543(7643), pages 87-90, March.
    5. Sebastien Balibar, 2010. "The enigma of supersolidity," Nature, Nature, vol. 464(7286), pages 176-182, March.
    6. F. Cinti & T. Macrì & W. Lechner & G. Pupillo & T. Pohl, 2014. "Defect-induced supersolidity with soft-core bosons," Nature Communications, Nature, vol. 5(1), pages 1-6, May.
    7. Miroslaw Salamonczyk & Jing Zhang & Giuseppe Portale & Chenhui Zhu & Emmanuel Kentzinger & James T. Gleeson & Antal Jakli & Cristiano De Michele & Jan K. G. Dhont & Samuel Sprunt & Emmanuel Stiakakis, 2016. "Smectic phase in suspensions of gapped DNA duplexes," Nature Communications, Nature, vol. 7(1), pages 1-9, December.
    8. Ralf Biehl, 2019. "Jscatter, a program for evaluation and analysis of experimental data," PLOS ONE, Public Library of Science, vol. 14(6), pages 1-18, June.
    9. Francesco Sciortino & Emanuela Zaccarelli, 2013. "Soft heaps and clumpy crystals," Nature, Nature, vol. 493(7430), pages 30-31, January.
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