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Spatial validation reveals poor predictive performance of large-scale ecological mapping models

Author

Listed:
  • Pierre Ploton

    (AMAP, Univ Montpellier, IRD, CNRS, INRAE, CIRAD)

  • Frédéric Mortier

    (UPR Forêts et Sociétés
    Université de Montpellier)

  • Maxime Réjou-Méchain

    (AMAP, Univ Montpellier, IRD, CNRS, INRAE, CIRAD)

  • Nicolas Barbier

    (AMAP, Univ Montpellier, IRD, CNRS, INRAE, CIRAD)

  • Nicolas Picard

    (Via della Sforzesca 1)

  • Vivien Rossi

    (CIRAD, UPR Forêts et Sociétés)

  • Carsten Dormann

    (University of Freiburg)

  • Guillaume Cornu

    (UPR Forêts et Sociétés
    Université de Montpellier)

  • Gaëlle Viennois

    (AMAP, Univ Montpellier, IRD, CNRS, INRAE, CIRAD)

  • Nicolas Bayol

    (Forêt Ressources Management Ingénierie)

  • Alexei Lyapustin

    (NASA Goddard Space Flight Center)

  • Sylvie Gourlet-Fleury

    (UPR Forêts et Sociétés
    Université de Montpellier)

  • Raphaël Pélissier

    (AMAP, Univ Montpellier, IRD, CNRS, INRAE, CIRAD)

Abstract

Mapping aboveground forest biomass is central for assessing the global carbon balance. However, current large-scale maps show strong disparities, despite good validation statistics of their underlying models. Here, we attribute this contradiction to a flaw in the validation methods, which ignore spatial autocorrelation (SAC) in data, leading to overoptimistic assessment of model predictive power. To illustrate this issue, we reproduce the approach of large-scale mapping studies using a massive forest inventory dataset of 11.8 million trees in central Africa to train and validate a random forest model based on multispectral and environmental variables. A standard nonspatial validation method suggests that the model predicts more than half of the forest biomass variation, while spatial validation methods accounting for SAC reveal quasi-null predictive power. This study underscores how a common practice in big data mapping studies shows an apparent high predictive power, even when predictors have poor relationships with the ecological variable of interest, thus possibly leading to erroneous maps and interpretations.

Suggested Citation

  • Pierre Ploton & Frédéric Mortier & Maxime Réjou-Méchain & Nicolas Barbier & Nicolas Picard & Vivien Rossi & Carsten Dormann & Guillaume Cornu & Gaëlle Viennois & Nicolas Bayol & Alexei Lyapustin & Syl, 2020. "Spatial validation reveals poor predictive performance of large-scale ecological mapping models," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:11:y:2020:i:1:d:10.1038_s41467-020-18321-y
    DOI: 10.1038/s41467-020-18321-y
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    Cited by:

    1. Katerina Georgiou & Robert B. Jackson & Olga Vindušková & Rose Z. Abramoff & Anders Ahlström & Wenting Feng & Jennifer W. Harden & Adam F. A. Pellegrini & H. Wayne Polley & Jennifer L. Soong & William, 2022. "Global stocks and capacity of mineral-associated soil organic carbon," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    2. Marsh, Charles J. & Gavish, Yoni & Kuemmerlen, Mathias & Stoll, Stefan & Haase, Peter & Kunin, William E., 2023. "SDM profiling: A tool for assessing the information-content of sampled and unsampled locations for species distribution models," Ecological Modelling, Elsevier, vol. 475(C).
    3. Wadoux, Alexandre M.J.-C. & Heuvelink, Gerard B.M. & de Bruin, Sytze & Brus, Dick J., 2021. "Spatial cross-validation is not the right way to evaluate map accuracy," Ecological Modelling, Elsevier, vol. 457(C).
    4. Gustavo Larrea‐Gallegos & Ian Vázquez‐Rowe, 2022. "Exploring machine learning techniques to predict deforestation to enhance the decision‐making of road construction projects," Journal of Industrial Ecology, Yale University, vol. 26(1), pages 225-239, February.
    5. Hanna Meyer & Edzer Pebesma, 2022. "Machine learning-based global maps of ecological variables and the challenge of assessing them," Nature Communications, Nature, vol. 13(1), pages 1-4, December.
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    7. Anton M. Potapov & Carlos A. Guerra & Johan Hoogen & Anatoly Babenko & Bruno C. Bellini & Matty P. Berg & Steven L. Chown & Louis Deharveng & Ľubomír Kováč & Natalia A. Kuznetsova & Jean-François Pong, 2023. "Globally invariant metabolism but density-diversity mismatch in springtails," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    8. Ali Ismaeel & Amos P. K. Tai & Erone Ghizoni Santos & Heveakore Maraia & Iris Aalto & Jan Altman & Jiří Doležal & Jonas J. Lembrechts & José Luís Camargo & Juha Aalto & Kateřina Sam & Lair Cristina Av, 2024. "Patterns of tropical forest understory temperatures," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    9. Haider, Saira M. & Benscoter, Allison M. & Pearlstine, Leonard & D'Acunto, Laura E. & Romañach, Stephanie S., 2021. "Landscape-scale drivers of endangered Cape Sable Seaside Sparrow (Ammospiza maritima mirabilis) presence using an ensemble modeling approach," Ecological Modelling, Elsevier, vol. 461(C).
    10. Wan-Yi Zhao & Zhong-Cheng Liu & Shi Shi & Jie-Lan Li & Ke-Wang Xu & Kang-You Huang & Zhi-Hui Chen & Ya-Rong Wang & Cui-Ying Huang & Yan Wang & Jing-Rui Chen & Xian-Ling Sun & Wen-Xing Liang & Wei Guo , 2024. "Landform and lithospheric development contribute to the assembly of mountain floras in China," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    11. Francesco Maria Sabatini & Borja Jiménez-Alfaro & Ute Jandt & Milan Chytrý & Richard Field & Michael Kessler & Jonathan Lenoir & Franziska Schrodt & Susan K. Wiser & Mohammed A. S. Arfin Khan & Fabio , 2022. "Global patterns of vascular plant alpha diversity," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    12. Xuejun Yang & Carol C. Baskin & Jerry M. Baskin & Robin J. Pakeman & Zhenying Huang & Ruiru Gao & Johannes H. C. Cornelissen, 2021. "Global patterns of potential future plant diversity hidden in soil seed banks," Nature Communications, Nature, vol. 12(1), pages 1-8, December.
    13. Temesgen Alemayehu Abera & Janne Heiskanen & Eduardo Eiji Maeda & Mohammed Ahmed Muhammed & Netra Bhandari & Ville Vakkari & Binyam Tesfaw Hailu & Petri K. E. Pellikka & Andreas Hemp & Pieter G. Zyl &, 2024. "Deforestation amplifies climate change effects on warming and cloud level rise in African montane forests," Nature Communications, Nature, vol. 15(1), pages 1-10, December.

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