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MissMech: An R Package for Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random (MCAR)

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  • Jamshidian, Mortaza
  • Jalal, Siavash
  • Jansen, Camden

Abstract

Researchers are often faced with analyzing data sets that are not complete. To properly analyze such data sets requires the knowledge of the missing data mechanism. If data are missing completely at random (MCAR), then many missing data analysis techniques lead to valid inference. Thus, tests of MCAR are desirable. The package MissMech implements two tests developed by Jamshidian and Jalal (2010) for this purpose. These tests can be run using a function called TestMCARNormality. One of the tests is valid if data are normally distributed, and another test does not require any distributional assumptions for the data. In addition to testing MCAR, in some special cases, the function TestMCARNormality is also able to test whether data have a multivariate normal distribution. As a bonus, the functions in MissMech can also be used for the following additional tasks: (i) test of homoscedasticity for several groups when data are completely observed, (ii) perform the k-sample test of Anderson-Darling to determine whether k groups of univariate data come from the same distribution, (iii) impute incomplete data sets using two methods, one where normality is assumed and one where no specific distributional assumptions are made, (iv) obtain normal-theory maximum likelihood estimates for mean and covariance matrix when data are incomplete, along with their standard errors, and finally (v) perform the Neyman’s test of uniformity. All of these features are explained in the paper, including examples.

Suggested Citation

  • Jamshidian, Mortaza & Jalal, Siavash & Jansen, Camden, 2014. "MissMech: An R Package for Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random (MCAR)," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 56(i06).
    • Handle: RePEc:jss:jstsof:v:056:i06
    DOI: http://hdl.handle.net/10.18637/jss.v056.i06
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    References listed on IDEAS

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    1. Mortaza Jamshidian & Siavash Jalal, 2010. "Tests of Homoscedasticity, Normality, and Missing Completely at Random for Incomplete Multivariate Data," Psychometrika, Springer;The Psychometric Society, vol. 75(4), pages 649-674, December.
    2. Honaker, James & King, Gary & Blackwell, Matthew, 2011. "Amelia II: A Program for Missing Data," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 45(i07).
    3. Srivastava, Muni S. & Dolatabadi, Mohammad, 2009. "Multiple imputation and other resampling schemes for imputing missing observations," Journal of Multivariate Analysis, Elsevier, vol. 100(9), pages 1919-1937, October.
    4. Mortaza Jamshidian & Peter M. Bentler, 1999. "ML Estimation of Mean and Covariance Structures with Missing Data Using Complete Data Routines," Journal of Educational and Behavioral Statistics, , vol. 24(1), pages 21-24, March.
    5. Kevin Kim & Peter Bentler, 2002. "Tests of homogeneity of means and covariance matrices for multivariate incomplete data," Psychometrika, Springer;The Psychometric Society, vol. 67(4), pages 609-623, December.
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