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Predicting Biomass Yields of Advanced Switchgrass Cultivars for Bioenergy and Ecosystem Services Using Machine Learning

Author

Listed:
  • Jules F. Cacho

    (Environmental Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Lemont, IL 60439, USA)

  • Jeremy Feinstein

    (Environmental Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Lemont, IL 60439, USA)

  • Colleen R. Zumpf

    (Environmental Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Lemont, IL 60439, USA)

  • Yuki Hamada

    (Environmental Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Lemont, IL 60439, USA)

  • Daniel J. Lee

    (Environmental Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Lemont, IL 60439, USA)

  • Nictor L. Namoi

    (Department of Crop Science, University of Illinois Urbana-Champaign, 1102 S. Goodwin Ave., Urbana, IL 61801, USA)

  • DoKyoung Lee

    (Department of Crop Science, University of Illinois Urbana-Champaign, 1102 S. Goodwin Ave., Urbana, IL 61801, USA)

  • Nicholas N. Boersma

    (Department of Agronomy, Iowa State University, 1223 Agronomy Hall, Ames, IA 50011, USA)

  • Emily A. Heaton

    (Department of Crop Science, University of Illinois Urbana-Champaign, 1102 S. Goodwin Ave., Urbana, IL 61801, USA)

  • John J. Quinn

    (Environmental Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Lemont, IL 60439, USA)

  • Cristina Negri

    (Environmental Science Division, Argonne National Laboratory, 9700 S. Cass Ave., Lemont, IL 60439, USA)

Abstract

The production of advanced perennial bioenergy crops within marginal areas of the agricultural landscape is gaining interest due to its potential to sustainably produce feedstocks for biofuels and bioproducts while also improving the sustainability and resilience of commodity crop production. However, predicting the biomass yields of this production system is challenging because marginal areas are often relatively small and spread around agricultural fields and are typically associated with various abiotic conditions that limit crop production. Machine learning (ML) offers a viable solution as a biomass yield prediction tool because it is suited to predicting relationships with complex functional associations. The objectives of this study were to (1) evaluate the accuracy of commonly applied ML algorithms in agricultural applications for predicting the biomass yields of advanced switchgrass cultivars for bioenergy and ecosystem services and (2) determine the most important biomass yield predictors. Datasets on biomass yield, weather, land marginality, soil properties, and agronomic management were generated from three field study sites in two U.S. Midwest states (Illinois and Iowa) over three growing seasons. The ML algorithms evaluated in the study included random forests (RFs), gradient boosting machines (GBMs), artificial neural networks (ANNs), K-neighbors regressor (KNR), AdaBoost regressor (ABR), and partial least squares regression (PLSR). Coefficient of determination (R 2 ) and mean absolute error (MAE) were used to evaluate the predictive accuracy of the tested algorithms. Results showed that the ensemble methods, RF (R 2 = 0.86, MAE = 0.62 Mg/ha), GBM (R 2 = 0.88, MAE = 0.57 Mg/ha), and GBM (R 2 = 0.78, MAE = 0.66 Mg/ha), were the most accurate in predicting biomass yields of the Independence, Liberty, and Shawnee switchgrass cultivars, respectively. This is in agreement with similar studies that apply ML to multi-feature problems where traditional statistical methods are less applicable and datasets used were considered to be relatively small for ANNs. Consistent with previous studies on switchgrass, the most important predictors of biomass yield included average annual temperature, average growing season temperature, sum of the growing season precipitation, field slope, and elevation. This study helps pave the way for applying ML as a management tool for alternative bioenergy landscapes where understanding agronomic and environmental performance of a multifunctional cropping system seasonally and interannually at the sub-field scale is critical.

Suggested Citation

  • Jules F. Cacho & Jeremy Feinstein & Colleen R. Zumpf & Yuki Hamada & Daniel J. Lee & Nictor L. Namoi & DoKyoung Lee & Nicholas N. Boersma & Emily A. Heaton & John J. Quinn & Cristina Negri, 2023. "Predicting Biomass Yields of Advanced Switchgrass Cultivars for Bioenergy and Ecosystem Services Using Machine Learning," Energies, MDPI, vol. 16(10), pages 1-16, May.
  • Handle: RePEc:gam:jeners:v:16:y:2023:i:10:p:4168-:d:1149949
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    References listed on IDEAS

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    1. Kaul, Monisha & Hill, Robert L. & Walthall, Charles, 2005. "Artificial neural networks for corn and soybean yield prediction," Agricultural Systems, Elsevier, vol. 85(1), pages 1-18, July.
    2. Yuki Hamada & Colleen R. Zumpf & Jules F. Cacho & DoKyoung Lee & Cheng-Hsien Lin & Arvid Boe & Emily Heaton & Robert Mitchell & Maria Cristina Negri, 2021. "Remote Sensing-Based Estimation of Advanced Perennial Grass Biomass Yields for Bioenergy," Land, MDPI, vol. 10(11), pages 1-22, November.
    3. J. F. Cacho & M. C. Negri & C. R. Zumpf & P. Campbell, 2018. "Introducing perennial biomass crops into agricultural landscapes to address water quality challenges and provide other environmental services," Wiley Interdisciplinary Reviews: Energy and Environment, Wiley Blackwell, vol. 7(2), March.
    4. Hyeon-Woo Kang & Hang-Bong Kang, 2017. "Prediction of crime occurrence from multi-modal data using deep learning," PLOS ONE, Public Library of Science, vol. 12(4), pages 1-19, April.
    5. Charles R. Harris & K. Jarrod Millman & Stéfan J. Walt & Ralf Gommers & Pauli Virtanen & David Cournapeau & Eric Wieser & Julian Taylor & Sebastian Berg & Nathaniel J. Smith & Robert Kern & Matti Picu, 2020. "Array programming with NumPy," Nature, Nature, vol. 585(7825), pages 357-362, September.
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    Cited by:

    1. Xiangjuan Liu & Qiaonan Yang & Rurou Yang & Lin Liu & Xibing Li, 2024. "Corn Yield Prediction Based on Dynamic Integrated Stacked Regression," Agriculture, MDPI, vol. 14(10), pages 1-18, October.
    2. Yuki Hamada & Colleen R. Zumpf & John J. Quinn & Maria Cristina Negri, 2023. "Estimating Field-Level Perennial Bioenergy Grass Biomass Yields Using the Normalized Difference Red-Edge Index and Linear Regression Analysis for Central Virginia, USA," Energies, MDPI, vol. 16(21), pages 1-15, November.

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