IDEAS home Printed from https://ideas.repec.org/a/gam/jagris/v14y2023i1p77-d1310925.html
   My bibliography  Save this article

The Exceptionally Large Genomes of the Fabeae Tribe: Comparative Genomics and Applications in Abiotic and Biotic Stress Studies

Author

Listed:
  • Carmen Santos

    (Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal
    These authors contributed equally to this work.)

  • Susana Trindade Leitão

    (Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, 2780-157 Oeiras, Portugal
    These authors contributed equally to this work.)

Abstract

The Fabeae tribe comprises five legume genera, which include some of the most ancient and important crops, like peas, lentils, and faba beans. Biotic and environmental stresses are major threats to the stable and high productivity of Fabeae crops. The use of omics resources can provide breeders with the tools needed to develop new crop varieties in a more efficient and sustainable way. However, the genomic efforts on Fabeae crops have lagged behind compared to other legume species, mainly due to their large genome size and repeat content. The first annotated chromosome-level reference genome assembly in Fabeae was published for pea ( Pisum sativum cv. Caméor) in 2019. Since then, many efforts have been made to sequence the genome of other species from this tribe. Currently, 17 genomes of Fabeae species are available for the scientific community; five of them are at the chromosome level. Fundamental knowledge and molecular tools for breeding have been boosted on the legume resistance/tolerance against biotic and abiotic stresses by the availability of some of these recent reference genomes, especially the pea cv. Caméor genome. This review provides a comparison of the Fabeae tribe genomes available and an overview of recent accomplishments in their application in abiotic and biotic stress research.

Suggested Citation

  • Carmen Santos & Susana Trindade Leitão, 2023. "The Exceptionally Large Genomes of the Fabeae Tribe: Comparative Genomics and Applications in Abiotic and Biotic Stress Studies," Agriculture, MDPI, vol. 14(1), pages 1-21, December.
  • Handle: RePEc:gam:jagris:v:14:y:2023:i:1:p:77-:d:1310925
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/2077-0472/14/1/77/pdf
    Download Restriction: no

    File URL: https://www.mdpi.com/2077-0472/14/1/77/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Murukarthick Jayakodi & Agnieszka A. Golicz & Jonathan Kreplak & Lavinia I. Fechete & Deepti Angra & Petr Bednář & Elesandro Bornhofen & Hailin Zhang & Raphaël Boussageon & Sukhjiwan Kaur & Kwok Cheun, 2023. "The giant diploid faba genome unlocks variation in a global protein crop," Nature, Nature, vol. 615(7953), pages 652-659, March.
    2. Jonathan D. G. Jones & Jeffery L. Dangl, 2006. "The plant immune system," Nature, Nature, vol. 444(7117), pages 323-329, November.
    3. Nevin D. Young & Frédéric Debellé & Giles E. D. Oldroyd & Rene Geurts & Steven B. Cannon & Michael K. Udvardi & Vagner A. Benedito & Klaus F. X. Mayer & Jérôme Gouzy & Heiko Schoof & Yves Van de Peer , 2011. "The Medicago genome provides insight into the evolution of rhizobial symbioses," Nature, Nature, vol. 480(7378), pages 520-524, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Paul Vincelli, 2016. "Genetic Engineering and Sustainable Crop Disease Management: Opportunities for Case-by-Case Decision-Making," Sustainability, MDPI, vol. 8(5), pages 1-22, May.
    2. Rongrong Zhang & Yu Wu & Xiangru Qu & Wenjuan Yang & Qin Wu & Lin Huang & Qiantao Jiang & Jian Ma & Yazhou Zhang & Pengfei Qi & Guoyue Chen & Yunfeng Jiang & Youliang Zheng & Xiaojie Wang & Yuming Wei, 2024. "The RING-finger ubiquitin E3 ligase TaPIR1 targets TaHRP1 for degradation to suppress chloroplast function," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    3. Farhan Ali & Qingchun Pan & Genshen Chen & Kashif Rafiq Zahid & Jianbing Yan, 2013. "Evidence of Multiple Disease Resistance (MDR) and Implication of Meta-Analysis in Marker Assisted Selection," PLOS ONE, Public Library of Science, vol. 8(7), pages 1-12, July.
    4. Soohyun Oh & Myung-Shin Kim & Hui Jeong Kang & Taewon Kim & Junhyeong Kong & Doil Choi, 2024. "Conserved effector families render Phytophthora species vulnerable to recognition by NLR receptors in nonhost plants," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    5. Karine de Guillen & Diana Ortiz-Vallejo & Jérome Gracy & Elisabeth Fournier & Thomas Kroj & André Padilla, 2015. "Structure Analysis Uncovers a Highly Diverse but Structurally Conserved Effector Family in Phytopathogenic Fungi," PLOS Pathogens, Public Library of Science, vol. 11(10), pages 1-27, October.
    6. Conner J. Rogan & Yin-Yuin Pang & Sophie D. Mathews & Sydney E. Turner & Alexandra J. Weisberg & Silke Lehmann & Doris Rentsch & Jeffrey C. Anderson, 2024. "Transporter-mediated depletion of extracellular proline directly contributes to plant pattern-triggered immunity against a bacterial pathogen," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    7. Yuki Hayashi & Kohei Fukatsu & Koji Takahashi & Satoru N. Kinoshita & Kyohei Kato & Taku Sakakibara & Keiko Kuwata & Toshinori Kinoshita, 2024. "Phosphorylation of plasma membrane H+-ATPase Thr881 participates in light-induced stomatal opening," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    8. Md Mijanur Rahman Rajib & Kuikui Li & Md Saikat Hossain Bhuiyan & Wenxia Wang & Jin Gao & Heng Yin, 2024. "Konjac Glucomannan Oligosaccharides (KGMOS) Confers Innate Immunity against Phytophthora nicotianae in Tobacco," Agriculture, MDPI, vol. 14(8), pages 1-17, August.
    9. Matheus Thomas Kuska & Jan Behmann & Mahsa Namini & Erich-Christian Oerke & Ulrike Steiner & Anne-Katrin Mahlein, 2019. "Discovering coherency of specific gene expression and optical reflectance properties of barley genotypes differing for resistance reactions against powdery mildew," PLOS ONE, Public Library of Science, vol. 14(3), pages 1-20, March.
    10. Gelsomina Manganiello & Nicola Nicastro & Luciano Ortenzi & Federico Pallottino & Corrado Costa & Catello Pane, 2024. "Trichoderma Biocontrol Performances against Baby-Lettuce Fusarium Wilt Surveyed by Hyperspectral Imaging-Based Machine Learning and Infrared Thermography," Agriculture, MDPI, vol. 14(2), pages 1-18, February.
    11. Fabien Lonjon & Yan Lai & Nasrin Askari & Niharikaa Aiyar & Cedoljub Bundalovic-Torma & Bradley Laflamme & Pauline W. Wang & Darrell Desveaux & David S. Guttman, 2024. "The effector-triggered immunity landscape of tomato against Pseudomonas syringae," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    12. Ana Cruz-Silva & Andreia Figueiredo & Mónica Sebastiana, 2021. "First Insights into the Effect of Mycorrhizae on the Expression of Pathogen Effectors during the Infection of Grapevine with Plasmopara viticola," Sustainability, MDPI, vol. 13(3), pages 1-12, January.
    13. Manish Kumar & Amandeep Brar & Monika Yadav & Aakash Chawade & V. Vivekanand & Nidhi Pareek, 2018. "Chitinases—Potential Candidates for Enhanced Plant Resistance towards Fungal Pathogens," Agriculture, MDPI, vol. 8(7), pages 1-12, June.
    14. Marcela Mendoza-Suárez & Turgut Yigit Akyol & Marcin Nadzieja & Stig U. Andersen, 2024. "Increased diversity of beneficial rhizobia enhances faba bean growth," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    15. Costas Bouyioukos & Matthew J Moscou & Nicolas Champouret & Inmaculada Hernández-Pinzón & Eric R Ward & Brande B H Wulff, 2013. "Characterisation and Analysis of the Aegilops sharonensis Transcriptome, a Wild Relative of Wheat in the Sitopsis Section," PLOS ONE, Public Library of Science, vol. 8(8), pages 1-1, August.
    16. Jan Bettgenhaeuser & Inmaculada Hernández-Pinzón & Andrew M. Dawson & Matthew Gardiner & Phon Green & Jodie Taylor & Matthew Smoker & John N. Ferguson & Peter Emmrich & Amelia Hubbard & Rosemary Bay, 2021. "The barley immune receptor Mla recognizes multiple pathogens and contributes to host range dynamics," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
    17. Lyudmila Plotnikova & Violetta Pozherukova & Valeria Knaub & Yuryi Kashuba, 2022. "What Was the Reason for the Durable Effect of Sr31 against Wheat Stem Rust?," Agriculture, MDPI, vol. 12(12), pages 1-18, December.
    18. Jianghua Cai & Sayantan Panda & Yana Kazachkova & Eden Amzallag & Zhengguo Li & Sagit Meir & Ilana Rogachev & Asaph Aharoni, 2024. "A NAC triad modulates plant immunity by negatively regulating N-hydroxy pipecolic acid biosynthesis," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    19. Beatriz Val-Torregrosa & Mireia Bundó & Blanca San Segundo, 2021. "Crosstalk between Nutrient Signalling Pathways and Immune Responses in Rice," Agriculture, MDPI, vol. 11(8), pages 1-21, August.
    20. Sisay Kidane Alemu & Ayele Badebo Huluka & Kassahun Tesfaye & Teklehaimanot Haileselassie & Cristobal Uauy, 2021. "Genome-wide association mapping identifies yellow rust resistance loci in Ethiopian durum wheat germplasm," PLOS ONE, Public Library of Science, vol. 16(5), pages 1-28, May.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jagris:v:14:y:2023:i:1:p:77-:d:1310925. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.