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The Medicago genome provides insight into the evolution of rhizobial symbioses

Author

Listed:
  • Nevin D. Young

    (University of Minnesota)

  • Frédéric Debellé

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Giles E. D. Oldroyd

    (Department of Disease and Stress Biology)

  • Rene Geurts

    (Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands)

  • Steven B. Cannon

    (USDA-ARS Corn Insects and Crop Genetics Research Unit
    Iowa State University)

  • Michael K. Udvardi

    (Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, Oklahoma 73401, USA)

  • Vagner A. Benedito

    (West Virginia University)

  • Klaus F. X. Mayer

    (MIPS/Institute for Bioinformatics and Systems Biology, Helmholtz Center Munich, Ingolstädter Landstrasse 1, Neuherberg, Germany)

  • Jérôme Gouzy

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Heiko Schoof

    (University of Bonn, INRES Crop Bioinformatics, Katzenburgweg 2, 53115 Bonn, Germany)

  • Yves Van de Peer

    (VIB, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium)

  • Sebastian Proost

    (VIB, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium)

  • Douglas R. Cook

    (University of California)

  • Blake C. Meyers

    (University of Delaware)

  • Manuel Spannagl

    (MIPS/Institute for Bioinformatics and Systems Biology, Helmholtz Center Munich, Ingolstädter Landstrasse 1, Neuherberg, Germany)

  • Foo Cheung

    (J. Craig Venter Institute, 9704 Medical Center Drive)

  • Stéphane De Mita

    (Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands)

  • Vivek Krishnakumar

    (J. Craig Venter Institute, 9704 Medical Center Drive)

  • Heidrun Gundlach

    (MIPS/Institute for Bioinformatics and Systems Biology, Helmholtz Center Munich, Ingolstädter Landstrasse 1, Neuherberg, Germany)

  • Shiguo Zhou

    (Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison)

  • Joann Mudge

    (National Center for Genome Resources, 2935 Rodeo Park Drive East)

  • Arvind K. Bharti

    (National Center for Genome Resources, 2935 Rodeo Park Drive East)

  • Jeremy D. Murray

    (Department of Disease and Stress Biology
    Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, Oklahoma 73401, USA)

  • Marina A. Naoumkina

    (Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, Oklahoma 73401, USA)

  • Benjamin Rosen

    (University of California)

  • Kevin A. T. Silverstein

    (Masonic Cancer Center, Biostatistics and Bioinformatics Group, University of Minnesota)

  • Haibao Tang

    (J. Craig Venter Institute, 9704 Medical Center Drive)

  • Stephane Rombauts

    (VIB, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium)

  • Patrick X. Zhao

    (Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, Oklahoma 73401, USA)

  • Peng Zhou

    (University of Minnesota)

  • Valérie Barbe

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Philippe Bardou

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Michael Bechner

    (Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison)

  • Arnaud Bellec

    (INRA, Centre National de Ressources Génomiques Végétales (CNRGV), BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Anne Berger

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Hélène Bergès

    (INRA, Centre National de Ressources Génomiques Végétales (CNRGV), BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Shelby Bidwell

    (J. Craig Venter Institute, 9704 Medical Center Drive)

  • Ton Bisseling

    (Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands
    College of Science, King Saud University)

  • Nathalie Choisne

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Arnaud Couloux

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Roxanne Denny

    (University of Minnesota)

  • Shweta Deshpande

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Xinbin Dai

    (Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, Oklahoma 73401, USA)

  • Jeff J. Doyle

    (Cornell University)

  • Anne-Marie Dudez

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Andrew D. Farmer

    (National Center for Genome Resources, 2935 Rodeo Park Drive East)

  • Stéphanie Fouteau

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Carolien Franken

    (Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands)

  • Chrystel Gibelin

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • John Gish

    (University of California)

  • Steven Goldstein

    (Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison)

  • Alvaro J. González

    (and Delaware Biotechnology Institute, University of Delaware)

  • Pamela J. Green

    (University of Delaware)

  • Asis Hallab

    (Max Planck Institute for Plant Breeding Research, Plant Computational Biology, Carl von Linné Weg 10, 50829 Köln, Germany)

  • Marijke Hartog

    (Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands)

  • Axin Hua

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Sean J. Humphray

    (Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK)

  • Dong-Hoon Jeong

    (University of Delaware)

  • Yi Jing

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Anika Jöcker

    (Max Planck Institute for Plant Breeding Research, Plant Computational Biology, Carl von Linné Weg 10, 50829 Köln, Germany)

  • Steve M. Kenton

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Dong-Jin Kim

    (University of California
    International Institute for Tropical Agriculture, (c/o P.O. Box 30709 Nairobi, Kenya 00100), Ibadan, Nigeria)

  • Kathrin Klee

    (Max Planck Institute for Plant Breeding Research, Plant Computational Biology, Carl von Linné Weg 10, 50829 Köln, Germany)

  • Hongshing Lai

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Chunting Lang

    (Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands)

  • Shaoping Lin

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Simone L. Macmil

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Ghislaine Magdelenat

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Lucy Matthews

    (Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK)

  • Jamison McCorrison

    (J. Craig Venter Institute, 9704 Medical Center Drive)

  • Erin L. Monaghan

    (J. Craig Venter Institute, 9704 Medical Center Drive)

  • Jeong-Hwan Mun

    (University of California
    National Institute of Agricultural Biotechnology, Rural Development Administration, 225 Seodun-dong, Gwonseon-gu, Suwon 441-707, South Korea)

  • Fares Z. Najar

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Christine Nicholson

    (Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK)

  • Céline Noirot

    (INRA, Unité de Biométrie et d'Intelligence Artificielle (UBIA), UR875, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Majesta O’Bleness

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Charles R. Paule

    (University of Minnesota)

  • Julie Poulain

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Florent Prion

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Baifang Qin

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Chunmei Qu

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Ernest F. Retzel

    (National Center for Genome Resources, 2935 Rodeo Park Drive East)

  • Claire Riddle

    (Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK)

  • Erika Sallet

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Sylvie Samain

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Nicolas Samson

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Iryna Sanders

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Olivier Saurat

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Claude Scarpelli

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Thomas Schiex

    (INRA, Unité de Biométrie et d'Intelligence Artificielle (UBIA), UR875, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Béatrice Segurens

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Andrew J. Severin

    (Iowa State University)

  • D. Janine Sherrier

    (University of Delaware)

  • Ruihua Shi

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Sarah Sims

    (Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK)

  • Susan R. Singer

    (Carleton College)

  • Senjuti Sinharoy

    (Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, Oklahoma 73401, USA)

  • Lieven Sterck

    (VIB, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium)

  • Agnès Viollet

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Bing-Bing Wang

    (University of Minnesota)

  • Keqin Wang

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Mingyi Wang

    (Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, Oklahoma 73401, USA)

  • Xiaohong Wang

    (University of Minnesota)

  • Jens Warfsmann

    (Max Planck Institute for Plant Breeding Research, Plant Computational Biology, Carl von Linné Weg 10, 50829 Köln, Germany)

  • Jean Weissenbach

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Doug D. White

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Jim D. White

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Graham B. Wiley

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Patrick Wincker

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Yanbo Xing

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Limei Yang

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Ziyun Yao

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Fu Ying

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Jixian Zhai

    (University of Delaware)

  • Liping Zhou

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

  • Antoine Zuber

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Jean Dénarié

    (INRA, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR441, BP 52627, F-31326 Castanet-Tolosan CEDEX, France
    CNRS, Laboratoire des Intéractions Plantes-Microorganismes (LIPM), UMR2594, BP 52627, F-31326 Castanet-Tolosan CEDEX, France)

  • Richard A. Dixon

    (Samuel Roberts Noble Foundation, 2510 Sam Noble Parkway, Ardmore, Oklahoma 73401, USA)

  • Gregory D. May

    (National Center for Genome Resources, 2935 Rodeo Park Drive East)

  • David C. Schwartz

    (Laboratory for Molecular and Computational Genomics, University of Wisconsin-Madison)

  • Jane Rogers

    (The Genome Analysis Centre, Norwich Research Park)

  • Francis Quétier

    (Genoscope/Centre National de Séquençage, 2 rue Gaston Crémieux, CP 5706, 91057 Evry CEDEX, France)

  • Christopher D. Town

    (J. Craig Venter Institute, 9704 Medical Center Drive)

  • Bruce A. Roe

    (Advanced Center for Genome Technology, Stephenson Research and Technology Center, University of Oklahoma)

Abstract

Sequencing of Medicago truncatula, a model organism of legume biology, shows that genome duplications had a role in the evolution of endosymbiotic nitrogen fixation.

Suggested Citation

  • Nevin D. Young & Frédéric Debellé & Giles E. D. Oldroyd & Rene Geurts & Steven B. Cannon & Michael K. Udvardi & Vagner A. Benedito & Klaus F. X. Mayer & Jérôme Gouzy & Heiko Schoof & Yves Van de Peer , 2011. "The Medicago genome provides insight into the evolution of rhizobial symbioses," Nature, Nature, vol. 480(7378), pages 520-524, December.
    • Handle: RePEc:nat:nature:v:480:y:2011:i:7378:d:10.1038_nature10625
    DOI: 10.1038/nature10625
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    Citations

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    Cited by:

    1. Kévin Magne & Sophie Massot & Tifaine Folletti & Laurent Sauviac & Elhosseyn Ait-Salem & Ilona Pires & Maged M. Saad & Abdul Aziz Eida & Salim Bougouffa & Adrien Jugan & Eleonora Rolli & Raphaël Forqu, 2024. "Atypical rhizobia trigger nodulation and pathogenesis on the same legume hosts," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    2. Carmen Santos & Susana Trindade Leitão, 2023. "The Exceptionally Large Genomes of the Fabeae Tribe: Comparative Genomics and Applications in Abiotic and Biotic Stress Studies," Agriculture, MDPI, vol. 14(1), pages 1-21, December.

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