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An energy budget agent-based model of earthworm populations and its application to study the effects of pesticides

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  • Johnston, A.S.A.
  • Hodson, M.E.
  • Thorbek, P.
  • Alvarez, T.
  • Sibly, R.M.

Abstract

Earthworms are important organisms in soil communities and so are used as model organisms in environmental risk assessments of chemicals. However current risk assessments of soil invertebrates are based on short-term laboratory studies, of limited ecological relevance, supplemented if necessary by site-specific field trials, which sometimes are challenging to apply across the whole agricultural landscape. Here, we investigate whether population responses to environmental stressors and pesticide exposure can be accurately predicted by combining energy budget and agent-based models (ABMs), based on knowledge of how individuals respond to their local circumstances. A simple energy budget model was implemented within each earthworm Eisenia fetida in the ABM, based on a priori parameter estimates. From broadly accepted physiological principles, simple algorithms specify how energy acquisition and expenditure drive life cycle processes. Each individual allocates energy between maintenance, growth and/or reproduction under varying conditions of food density, soil temperature and soil moisture. When simulating published experiments, good model fits were obtained to experimental data on individual growth, reproduction and starvation. Using the energy budget model as a platform we developed methods to identify which of the physiological parameters in the energy budget model (rates of ingestion, maintenance, growth or reproduction) are primarily affected by pesticide applications, producing four hypotheses about how toxicity acts. We tested these hypotheses by comparing model outputs with published toxicity data on the effects of copper oxychloride and chlorpyrifos on E. fetida. Both growth and reproduction were directly affected in experiments in which sufficient food was provided, whilst maintenance was targeted under food limitation. Although we only incorporate toxic effects at the individual level we show how ABMs can readily extrapolate to larger scales by providing good model fits to field population data. The ability of the presented model to fit the available field and laboratory data for E. fetida demonstrates the promise of the agent-based approach in ecology, by showing how biological knowledge can be used to make ecological inferences. Further work is required to extend the approach to populations of more ecologically relevant species studied at the field scale. Such a model could help extrapolate from laboratory to field conditions and from one set of field conditions to another or from species to species.

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  • Johnston, A.S.A. & Hodson, M.E. & Thorbek, P. & Alvarez, T. & Sibly, R.M., 2014. "An energy budget agent-based model of earthworm populations and its application to study the effects of pesticides," Ecological Modelling, Elsevier, vol. 280(C), pages 5-17.
  • Handle: RePEc:eee:ecomod:v:280:y:2014:i:c:p:5-17
    DOI: 10.1016/j.ecolmodel.2013.09.012
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    References listed on IDEAS

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    1. Jager, Tjalling & Zimmer, Elke I., 2012. "Simplified Dynamic Energy Budget model for analysing ecotoxicity data," Ecological Modelling, Elsevier, vol. 225(C), pages 74-81.
    2. Grimm, Volker & Berger, Uta & DeAngelis, Donald L. & Polhill, J. Gary & Giske, Jarl & Railsback, Steven F., 2010. "The ODD protocol: A review and first update," Ecological Modelling, Elsevier, vol. 221(23), pages 2760-2768.
    3. Vorpahl, Peter & Moenickes, Sylvia & Richter, Otto, 2009. "Modelling of spatio-temporal population dynamics of earthworms under wetland conditions—An integrated approach," Ecological Modelling, Elsevier, vol. 220(24), pages 3647-3657.
    4. Hobbelen, P.H.F. & van Gestel, C.A.M., 2007. "Using dynamic energy budget modeling to predict the influence of temperature and food density on the effect of Cu on earthworm mediated litter consumption," Ecological Modelling, Elsevier, vol. 202(3), pages 373-384.
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    2. van der Vaart, Elske & Beaumont, Mark A. & Johnston, Alice S.A. & Sibly, Richard M., 2015. "Calibration and evaluation of individual-based models using Approximate Bayesian Computation," Ecological Modelling, Elsevier, vol. 312(C), pages 182-190.
    3. Chertov, Oleg & Shaw, Cindy & Shashkov, Maxim & Komarov, Alexander & Bykhovets, Sergey & Shanin, Vladimir & Grabarnik, Pavel & Frolov, Pavel & Kalinina, Olga & Priputina, Irina & Zubkova, Elena, 2017. "Romul_Hum model of soil organic matter formation coupled with soil biota activity. III. Parameterisation of earthworm activity," Ecological Modelling, Elsevier, vol. 345(C), pages 140-149.
    4. Meier, Laura & Brauns, Mario & Grimm, Volker & Weitere, Markus & Frank, Karin, 2022. "MASTIFF: A mechanistic model for cross-scale analyses of the functioning of multiple stressed riverine ecosystems," Ecological Modelling, Elsevier, vol. 470(C).
    5. Grimm, Volker & Augusiak, Jacqueline & Focks, Andreas & Frank, Béatrice M. & Gabsi, Faten & Johnston, Alice S.A. & Liu, Chun & Martin, Benjamin T. & Meli, Mattia & Radchuk, Viktoriia & Thorbek, Pernil, 2014. "Towards better modelling and decision support: Documenting model development, testing, and analysis using TRACE," Ecological Modelling, Elsevier, vol. 280(C), pages 129-139.
    6. Cartwright, Samantha J. & Bowgen, Katharine M. & Collop, Catherine & Hyder, Kieran & Nabe-Nielsen, Jacob & Stafford, Richard & Stillman, Richard A. & Thorpe, Robert B. & Sibly, Richard M., 2016. "Communicating complex ecological models to non-scientist end users," Ecological Modelling, Elsevier, vol. 338(C), pages 51-59.
    7. Strauss, Tido & Kulkarni, Devdutt & Preuss, Thomas G. & Hammers-Wirtz, Monika, 2016. "The secret lives of cannibals: Modelling density-dependent processes that regulate population dynamics in Chaoborus crystallinus," Ecological Modelling, Elsevier, vol. 321(C), pages 84-97.
    8. van der Vaart, Elske & Johnston, Alice S.A. & Sibly, Richard M., 2016. "Predicting how many animals will be where: How to build, calibrate and evaluate individual-based models," Ecological Modelling, Elsevier, vol. 326(C), pages 113-123.
    9. Beltran, Roxanne S. & Testa, J. Ward & Burns, Jennifer M., 2017. "An agent-based bioenergetics model for predicting impacts of environmental change on a top marine predator, the Weddell seal," Ecological Modelling, Elsevier, vol. 351(C), pages 36-50.
    10. Rakel, Kim J. & Preuss, Thomas G. & Gergs, André, 2020. "Individual-based dynamic energy budget modelling of earthworm life-histories in the context of competition," Ecological Modelling, Elsevier, vol. 432(C).

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