IDEAS home Printed from https://ideas.repec.org/a/eee/csdana/v187y2023ics0167947323000956.html
   My bibliography  Save this article

Partial sufficient variable screening with categorical controls

Author

Listed:
  • Ke, Chenlu
  • Yang, Wei
  • Yuan, Qingcong
  • Li, Lu

Abstract

Variable screening as a fast and effective dimension reduction tool plays an important role in analyzing ultrahigh dimensional data. While a very large number of actual datasets contain both continuous and categorical variables, existing methods are mostly designed for continuous data. Partial sufficient variable screening, which aims to reduce the predictive set of primary interest without loss of regression information in the presence of some control variables, is proposed with theoretical guarantees. Specifically, for regression analyses involving mixed types of predictors, variable screening is approached under the notion of sufficiency by constraining the reduction of the continuous variables through the subpopulations identified by the categorical variables. The effectiveness of the proposed method is demonstrated through simulation studies encompassing a variety of regression and classification models, and an application in prognostic gene screening for diffuse large-B-cell lymphoma.

Suggested Citation

  • Ke, Chenlu & Yang, Wei & Yuan, Qingcong & Li, Lu, 2023. "Partial sufficient variable screening with categorical controls," Computational Statistics & Data Analysis, Elsevier, vol. 187(C).
    • Handle: RePEc:eee:csdana:v:187:y:2023:i:c:s0167947323000956
    DOI: 10.1016/j.csda.2023.107784
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0167947323000956
    Download Restriction: Full text for ScienceDirect subscribers only.
    File URL: https://libkey.io/10.1016/j.csda.2023.107784?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Jingyuan Liu & Runze Li & Rongling Wu, 2014. "Feature Selection for Varying Coefficient Models With Ultrahigh-Dimensional Covariates," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(505), pages 266-274, March.
    2. Chenlu Ke & Xiangrong Yin, 2020. "Expected Conditional Characteristic Function-based Measures for Testing Independence," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 115(530), pages 985-996, April.
    3. Emre Barut & Jianqing Fan & Anneleen Verhasselt, 2016. "Conditional Sure Independence Screening," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(515), pages 1266-1277, July.
    4. Hengjian Cui & Runze Li & Wei Zhong, 2015. "Model-Free Feature Screening for Ultrahigh Dimensional Discriminant Analysis," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(510), pages 630-641, June.
    5. Runze Li & Wei Zhong & Liping Zhu, 2012. "Feature Screening via Distance Correlation Learning," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(499), pages 1129-1139, September.
    6. Jianqing Fan & Yunbei Ma & Wei Dai, 2014. "Nonparametric Independence Screening in Sparse Ultra-High-Dimensional Varying Coefficient Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(507), pages 1270-1284, September.
    7. Xiangrong Yin & Haileab Hilafu, 2015. "Sequential sufficient dimension reduction for large p, small n problems," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 77(4), pages 879-892, September.
    8. Li, Lu & Ke, Chenlu & Yin, Xiangrong & Yu, Zhou, 2023. "Generalized martingale difference divergence: Detecting conditional mean independence with applications in variable screening," Computational Statistics & Data Analysis, Elsevier, vol. 180(C).
    9. Xin Chen & R. Dennis Cook & Changliang Zou, 2015. "Diagnostic studies in sufficient dimension reduction," Biometrika, Biometrika Trust, vol. 102(3), pages 545-558.
    10. Francesca Chiaromonte & R. Cook, 2002. "Sufficient Dimension Reduction and Graphics in Regression," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 54(4), pages 768-795, December.
    11. Dong, Yuexiao & Yu, Zhou & Zhu, Liping, 2020. "Model-free variable selection for conditional mean in regression," Computational Statistics & Data Analysis, Elsevier, vol. 152(C).
    12. repec:wyi:journl:002176 is not listed on IDEAS
    13. Yuan, Qingcong & Chen, Xianyan & Ke, Chenlu & Yin, Xiangrong, 2022. "Independence index sufficient variable screening for categorical responses," Computational Statistics & Data Analysis, Elsevier, vol. 174(C).
    14. Zhenghui Feng & Xuerong Meggie Wen & Zhou Yu & Lixing Zhu, 2013. "On Partial Sufficient Dimension Reduction With Applications to Partially Linear Multi-Index Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(501), pages 237-246, March.
    15. Xiaofeng Shao & Jingsi Zhang, 2014. "Martingale Difference Correlation and Its Use in High-Dimensional Variable Screening," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(507), pages 1302-1318, September.
    16. Jianqing Fan & Jinchi Lv, 2008. "Sure independence screening for ultrahigh dimensional feature space," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(5), pages 849-911, November.
    17. Yang, Baoying & Yin, Xiangrong & Zhang, Nan, 2019. "Sufficient variable selection using independence measures for continuous response," Journal of Multivariate Analysis, Elsevier, vol. 173(C), pages 480-493.
    18. Xueqin Wang & Wenliang Pan & Wenhao Hu & Yuan Tian & Heping Zhang, 2015. "Conditional Distance Correlation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(512), pages 1726-1734, December.
    19. Hyokyoung G. Hong & Jian Kang & Yi Li, 2018. "Conditional screening for ultra-high dimensional covariates with survival outcomes," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 24(1), pages 45-71, January.
    20. Qing Mai & Hui Zou, 2013. "The Kolmogorov filter for variable screening in high-dimensional binary classification," Biometrika, Biometrika Trust, vol. 100(1), pages 229-234.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Yuan, Qingcong & Chen, Xianyan & Ke, Chenlu & Yin, Xiangrong, 2022. "Independence index sufficient variable screening for categorical responses," Computational Statistics & Data Analysis, Elsevier, vol. 174(C).
    2. Yang, Baoying & Yin, Xiangrong & Zhang, Nan, 2019. "Sufficient variable selection using independence measures for continuous response," Journal of Multivariate Analysis, Elsevier, vol. 173(C), pages 480-493.
    3. Jing Zhang & Haibo Zhou & Yanyan Liu & Jianwen Cai, 2021. "Conditional screening for ultrahigh-dimensional survival data in case-cohort studies," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 27(4), pages 632-661, October.
    4. Zhou, Yeqing & Liu, Jingyuan & Zhu, Liping, 2020. "Test for conditional independence with application to conditional screening," Journal of Multivariate Analysis, Elsevier, vol. 175(C).
    5. Wang, Pei & Yin, Xiangrong & Yuan, Qingcong & Kryscio, Richard, 2021. "Feature filter for estimating central mean subspace and its sparse solution," Computational Statistics & Data Analysis, Elsevier, vol. 163(C).
    6. Zhang, Shucong & Zhou, Yong, 2018. "Variable screening for ultrahigh dimensional heterogeneous data via conditional quantile correlations," Journal of Multivariate Analysis, Elsevier, vol. 165(C), pages 1-13.
    7. Lu, Jun & Lin, Lu & Wang, WenWu, 2021. "Partition-based feature screening for categorical data via RKHS embeddings," Computational Statistics & Data Analysis, Elsevier, vol. 157(C).
    8. Xi Wu & Shifeng Xiong & Weiyan Mu, 2023. "An Ensemble Method for Feature Screening," Mathematics, MDPI, vol. 11(2), pages 1-14, January.
    9. Lai, Peng & Song, Fengli & Chen, Kaiwen & Liu, Zhi, 2017. "Model free feature screening with dependent variable in ultrahigh dimensional binary classification," Statistics & Probability Letters, Elsevier, vol. 125(C), pages 141-148.
    10. Zhong, Wei & Wang, Jiping & Chen, Xiaolin, 2021. "Censored mean variance sure independence screening for ultrahigh dimensional survival data," Computational Statistics & Data Analysis, Elsevier, vol. 159(C).
    11. Fengli Song & Peng Lai & Baohua Shen, 2020. "Robust composite weighted quantile screening for ultrahigh dimensional discriminant analysis," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 83(7), pages 799-820, October.
    12. Yi Liu & Qihua Wang, 2018. "Model-free feature screening for ultrahigh-dimensional data conditional on some variables," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 70(2), pages 283-301, April.
    13. Craig, Sarah J.C. & Kenney, Ana M. & Lin, Junli & Paul, Ian M. & Birch, Leann L. & Savage, Jennifer S. & Marini, Michele E. & Chiaromonte, Francesca & Reimherr, Matthew L. & Makova, Kateryna D., 2023. "Constructing a polygenic risk score for childhood obesity using functional data analysis," Econometrics and Statistics, Elsevier, vol. 25(C), pages 66-86.
    14. Shuaishuai Chen & Jun Lu, 2023. "Quantile-Composited Feature Screening for Ultrahigh-Dimensional Data," Mathematics, MDPI, vol. 11(10), pages 1-21, May.
    15. Zhang, Shen & Zhao, Peixin & Li, Gaorong & Xu, Wangli, 2019. "Nonparametric independence screening for ultra-high dimensional generalized varying coefficient models with longitudinal data," Journal of Multivariate Analysis, Elsevier, vol. 171(C), pages 37-52.
    16. Yi Chu & Lu Lin, 2020. "Conditional SIRS for nonparametric and semiparametric models by marginal empirical likelihood," Statistical Papers, Springer, vol. 61(4), pages 1589-1606, August.
    17. Jun Lu & Lu Lin, 2020. "Model-free conditional screening via conditional distance correlation," Statistical Papers, Springer, vol. 61(1), pages 225-244, February.
    18. Jing Pan & Yuan Yu & Yong Zhou, 2018. "Nonparametric independence feature screening for ultrahigh-dimensional survival data," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 81(7), pages 821-847, October.
    19. Wang, Christina Dan & Chen, Zhao & Lian, Yimin & Chen, Min, 2022. "Asset selection based on high frequency Sharpe ratio," Journal of Econometrics, Elsevier, vol. 227(1), pages 168-188.
    20. Lu, Jun & Lin, Lu, 2018. "Feature screening for multi-response varying coefficient models with ultrahigh dimensional predictors," Computational Statistics & Data Analysis, Elsevier, vol. 128(C), pages 242-254.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:187:y:2023:i:c:s0167947323000956. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.