Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model
Author
Abstract
Suggested Citation
DOI: 10.1515/sagmb-2013-0031
Download full text from publisher
As the access to this document is restricted, you may want to search for a different version of it.
References listed on IDEAS
- Teh, Yee Whye & Jordan, Michael I. & Beal, Matthew J. & Blei, David M., 2006. "Hierarchical Dirichlet Processes," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1566-1581, December.
- RodrÃguez, Abel & Dunson, David B & Gelfand, Alan E, 2008. "The Nested Dirichlet Process," Journal of the American Statistical Association, American Statistical Association, vol. 103(483), pages 1131-1154.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Jin, Xin & Maheu, John M., 2016.
"Bayesian semiparametric modeling of realized covariance matrices,"
Journal of Econometrics, Elsevier, vol. 192(1), pages 19-39.
- Jin, Xin & Maheu, John M, 2014. "Bayesian Semiparametric Modeling of Realized Covariance Matrices," MPRA Paper 60102, University Library of Munich, Germany.
- Xin Jin & John M. Maheu, 2014. "Bayesian Semiparametric Modeling of Realized Covariance Matrices," Working Paper series 34_14, Rimini Centre for Economic Analysis.
- J. Griffin, 2011. "Bayesian clustering of distributions in stochastic frontier analysis," Journal of Productivity Analysis, Springer, vol. 36(3), pages 275-283, December.
- Martínez-Ovando Juan Carlos & Walker Stephen G., 2011. "Time-series Modelling, Stationarity and Bayesian Nonparametric Methods," Working Papers 2011-08, Banco de México.
- Bassetti, Federico & Casarin, Roberto & Leisen, Fabrizio, 2014.
"Beta-product dependent Pitman–Yor processes for Bayesian inference,"
Journal of Econometrics, Elsevier, vol. 180(1), pages 49-72.
- Federico Bassetti & Roberto Casarin & Fabrizio Leisen, 2013. "Beta-Product Dependent Pitman-Yor Processes for Bayesian Inference," Working Papers 2013:13, Department of Economics, University of Venice "Ca' Foscari".
- Sudhir Voleti & Praveen K. Kopalle & Pulak Ghosh, 2015. "An Interproduct Competition Model Incorporating Branding Hierarchy and Product Similarities Using Store-Level Data," Management Science, INFORMS, vol. 61(11), pages 2720-2738, November.
- Leisen, Fabrizio & Lijoi, Antonio, 2011. "Vectors of two-parameter Poisson-Dirichlet processes," Journal of Multivariate Analysis, Elsevier, vol. 102(3), pages 482-495, March.
- Antonio Lijoi & Bernardo Nipoti, 2013. "A class of hazard rate mixtures for combining survival data from different experiments," DEM Working Papers Series 059, University of Pavia, Department of Economics and Management.
- Bassetti, Federico & Casarin, Roberto & Leisen, Fabrizio, 2011. "Beta-product Poisson-Dirichlet Processes," DES - Working Papers. Statistics and Econometrics. WS 12160, Universidad Carlos III de Madrid. Departamento de EstadÃstica.
- Fabrizio Leisen & Antonio Lijoi, 2010. "Vectors of two-parameter Poisson-Dirichlet processes," Quaderni di Dipartimento 119, University of Pavia, Department of Economics and Quantitative Methods.
- Antonio Lijoi & Igor Prünster & Giovanni Rebaudo, 2023. "Flexible clustering via hidden hierarchical Dirichlet priors," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 50(1), pages 213-234, March.
- Peter Müeller & Fernando A. Quintana & Garritt Page, 2018. "Nonparametric Bayesian inference in applications," Statistical Methods & Applications, Springer;Società Italiana di Statistica, vol. 27(2), pages 175-206, June.
- Michelle Dietzen & Haoran Zhai & Olivia Lucas & Oriol Pich & Christopher Barrington & Wei-Ting Lu & Sophia Ward & Yanping Guo & Robert E. Hynds & Simone Zaccaria & Charles Swanton & Nicholas McGranaha, 2024. "Replication timing alterations are associated with mutation acquisition during breast and lung cancer evolution," Nature Communications, Nature, vol. 15(1), pages 1-23, December.
- Redivo, Edoardo & Nguyen, Hien D. & Gupta, Mayetri, 2020. "Bayesian clustering of skewed and multimodal data using geometric skewed normal distributions," Computational Statistics & Data Analysis, Elsevier, vol. 152(C).
- Parvin Ahmadi & Iman Gholampour & Mahmoud Tabandeh, 2018. "Cluster-based sparse topical coding for topic mining and document clustering," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 12(3), pages 537-558, September.
- Jeffrey L. Furman & Florenta Teodoridis, 2020. "Automation, Research Technology, and Researchers’ Trajectories: Evidence from Computer Science and Electrical Engineering," Organization Science, INFORMS, vol. 31(2), pages 330-354, March.
- Xin Jin & John M. Maheu & Qiao Yang, 2019.
"Bayesian parametric and semiparametric factor models for large realized covariance matrices,"
Journal of Applied Econometrics, John Wiley & Sons, Ltd., vol. 34(5), pages 641-660, August.
- Jin, Xin & Maheu, John M & Yang, Qiao, 2017. "Bayesian Parametric and Semiparametric Factor Models for Large Realized Covariance Matrices," MPRA Paper 81920, University Library of Munich, Germany.
- Xin Jin & John M. Maheu & Qiao Yang, 2018. "Bayesian Parametric and Semiparametric Factor Models for Large Realized Covariance Matrices," Working Paper series 18-02, Rimini Centre for Economic Analysis.
- Csereklyei, Zsuzsanna & Anantharama, Nandini & Kallies, Anne, 2021. "Electricity market transitions in Australia: Evidence using model-based clustering," Energy Economics, Elsevier, vol. 103(C).
- Shu-Ping Shi & Yong Song, 2012.
"Identifying Speculative Bubbles with an Infinite Hidden Markov Model,"
Working Paper series
26_12, Rimini Centre for Economic Analysis.
- Song, Yong & Shi, Shuping, 2012. "Identifying speculative bubbles with an in finite hidden Markov model," MPRA Paper 36455, University Library of Munich, Germany.
- Lu Huang & Xiang Chen & Yi Zhang & Changtian Wang & Xiaoli Cao & Jiarun Liu, 2022. "Identification of topic evolution: network analytics with piecewise linear representation and word embedding," Scientometrics, Springer;Akadémiai Kiadó, vol. 127(9), pages 5353-5383, September.
- Gael M. Martin & David T. Frazier & Ruben Loaiza-Maya & Florian Huber & Gary Koop & John Maheu & Didier Nibbering & Anastasios Panagiotelis, 2023. "Bayesian Forecasting in the 21st Century: A Modern Review," Monash Econometrics and Business Statistics Working Papers 1/23, Monash University, Department of Econometrics and Business Statistics.
More about this item
Keywords
Clustering; DNA sequences; Markov chains; metagenomics;All these keywords.
Statistics
Access and download statisticsCorrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bpj:sagmbi:v:13:y:2014:i:1:p:105-121:n:7. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Peter Golla (email available below). General contact details of provider: https://www.degruyter.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.