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Clustering high‐dimensional data via feature selection

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  • Tianqi Liu
  • Yu Lu
  • Biqing Zhu
  • Hongyu Zhao

Abstract

High‐dimensional clustering analysis is a challenging problem in statistics and machine learning, with broad applications such as the analysis of microarray data and RNA‐seq data. In this paper, we propose a new clustering procedure called spectral clustering with feature selection (SC‐FS), where we first obtain an initial estimate of labels via spectral clustering, then select a small fraction of features with the largest R‐squared with these labels, that is, the proportion of variation explained by group labels, and conduct clustering again using selected features. Under mild conditions, we prove that the proposed method identifies all informative features with high probability and achieves the minimax optimal clustering error rate for the sparse Gaussian mixture model. Applications of SC‐FS to four real‐world datasets demonstrate its usefulness in clustering high‐dimensional data.

Suggested Citation

  • Tianqi Liu & Yu Lu & Biqing Zhu & Hongyu Zhao, 2023. "Clustering high‐dimensional data via feature selection," Biometrics, The International Biometric Society, vol. 79(2), pages 940-950, June.
  • Handle: RePEc:bla:biomet:v:79:y:2023:i:2:p:940-950
    DOI: 10.1111/biom.13665
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    References listed on IDEAS

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    1. Mahdi Zamanighomi & Zhixiang Lin & Timothy Daley & Xi Chen & Zhana Duren & Alicia Schep & William J. Greenleaf & Wing Hung Wong, 2018. "Unsupervised clustering and epigenetic classification of single cells," Nature Communications, Nature, vol. 9(1), pages 1-8, December.
    2. Jianqing Fan & Jinchi Lv, 2008. "Sure independence screening for ultrahigh dimensional feature space," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(5), pages 849-911, November.
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