IDEAS home Printed from https://ideas.repec.org/a/bla/biomet/v77y2021i3p956-969.html
   My bibliography  Save this article

Analysis of noisy survival data with graphical proportional hazards measurement error models

Author

Listed:
  • Li‐Pang Chen
  • Grace Y. Yi

Abstract

In survival data analysis, the Cox proportional hazards (PH) model is perhaps the most widely used model to feature the dependence of survival times on covariates. While many inference methods have been developed under such a model or its variants, those models are not adequate for handling data with complex structured covariates. High‐dimensional survival data often entail several features: (1) many covariates are inactive in explaining the survival information, (2) active covariates are associated in a network structure, and (3) some covariates are error‐contaminated. To hand such kinds of survival data, we propose graphical PH measurement error models and develop inferential procedures for the parameters of interest. Our proposed models significantly enlarge the scope of the usual Cox PH model and have great flexibility in characterizing survival data. Theoretical results are established to justify the proposed methods. Numerical studies are conducted to assess the performance of the proposed methods.

Suggested Citation

  • Li‐Pang Chen & Grace Y. Yi, 2021. "Analysis of noisy survival data with graphical proportional hazards measurement error models," Biometrics, The International Biometric Society, vol. 77(3), pages 956-969, September.
  • Handle: RePEc:bla:biomet:v:77:y:2021:i:3:p:956-969
    DOI: 10.1111/biom.13331
    as

    Download full text from publisher

    File URL: https://doi.org/10.1111/biom.13331
    Download Restriction: no

    File URL: https://libkey.io/10.1111/biom.13331?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
    2. Onkar Dalal & Bala Rajaratnam, 2017. "Sparse Gaussian graphical model estimation via alternating minimization," Biometrika, Biometrika Trust, vol. 104(2), pages 379-395.
    3. Wang, C. Y., 1999. "Robust sandwich covariance estimation for regression calibration estimator in Cox regression with measurement error," Statistics & Probability Letters, Elsevier, vol. 45(4), pages 371-378, December.
    4. Sharon X. Xie & C. Y. Wang & Ross L. Prentice, 2001. "A risk set calibration method for failure time regression by using a covariate reliability sample," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 63(4), pages 855-870.
    5. Hao Helen Zhang & Wenbin Lu, 2007. "Adaptive Lasso for Cox's proportional hazards model," Biometrika, Biometrika Trust, vol. 94(3), pages 691-703.
    6. Shanshan Zhao & Ross L. Prentice, 2014. "Covariate measurement error correction methods in mediation analysis with failure time data," Biometrics, The International Biometric Society, vol. 70(4), pages 835-844, December.
    7. Xiao Song & Yijian Huang, 2005. "On Corrected Score Approach for Proportional Hazards Model with Covariate Measurement Error," Biometrics, The International Biometric Society, vol. 61(3), pages 702-714, September.
    8. Kean Ming Tan & Yang Ning & Daniela M. Witten & Han Liu, 2016. "Replicates in high dimensions, with applications to latent variable graphical models," Biometrika, Biometrika Trust, vol. 103(4), pages 761-777.
    9. Jun Yan & Jian Huang, 2012. "Model Selection for Cox Models with Time-Varying Coefficients," Biometrics, The International Biometric Society, vol. 68(2), pages 419-428, June.
    10. Grace Y. Yi & Wenqing He, 2017. "Analysis of case-control data with interacting misclassified covariates," Journal of Statistical Distributions and Applications, Springer, vol. 4(1), pages 1-16, December.
    11. Grace Y. Yi & Yanyuan Ma & Donna Spiegelman & Raymond J. Carroll, 2015. "Functional and Structural Methods With Mixed Measurement Error and Misclassification in Covariates," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(510), pages 681-696, June.
    12. Hokeun Sun & Hongzhe Li, 2012. "Robust Gaussian Graphical Modeling Via l 1 Penalization," Biometrics, The International Biometric Society, vol. 68(4), pages 1197-1206, December.
    13. Helmut Küchenhoff & Samuel M. Mwalili & Emmanuel Lesaffre, 2006. "A General Method for Dealing with Misclassification in Regression: The Misclassification SIMEX," Biometrics, The International Biometric Society, vol. 62(1), pages 85-96, March.
    14. Jianwen Cai & Jianqing Fan & Runze Li & Haibo Zhou, 2005. "Variable selection for multivariate failure time data," Biometrika, Biometrika Trust, vol. 92(2), pages 303-316, June.
    15. Hansheng Wang & Runze Li & Chih-Ling Tsai, 2007. "Tuning parameter selectors for the smoothly clipped absolute deviation method," Biometrika, Biometrika Trust, vol. 94(3), pages 553-568.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Qihuang Zhang & Grace Y. Yi, 2023. "Generalized network structured models with mixed responses subject to measurement error and misclassification," Biometrics, The International Biometric Society, vol. 79(2), pages 1073-1088, June.
    2. Li-Pang Chen, 2022. "Network-Based Discriminant Analysis for Multiclassification," Journal of Classification, Springer;The Classification Society, vol. 39(3), pages 410-431, November.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Li-Pang Chen & Grace Y. Yi, 2021. "Semiparametric methods for left-truncated and right-censored survival data with covariate measurement error," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 73(3), pages 481-517, June.
    2. Joseph G. Ibrahim & Hongtu Zhu & Ramon I. Garcia & Ruixin Guo, 2011. "Fixed and Random Effects Selection in Mixed Effects Models," Biometrics, The International Biometric Society, vol. 67(2), pages 495-503, June.
    3. Xin Cheng & Wenbin Lu & Mengling Liu, 2015. "Identification of homogeneous and heterogeneous variables in pooled cohort studies," Biometrics, The International Biometric Society, vol. 71(2), pages 397-403, June.
    4. Wei Wang & Shou‐En Lu & Jerry Q. Cheng & Minge Xie & John B. Kostis, 2022. "Multivariate survival analysis in big data: A divide‐and‐combine approach," Biometrics, The International Biometric Society, vol. 78(3), pages 852-866, September.
    5. repec:hum:wpaper:sfb649dp2012-061 is not listed on IDEAS
    6. Honda, Toshio & Härdle, Wolfgang Karl, 2012. "Variable selection in Cox regression models with varying coefficients," SFB 649 Discussion Papers 2012-061, Humboldt University Berlin, Collaborative Research Center 649: Economic Risk.
    7. Tang, Linjun & Zhou, Zhangong & Wu, Changchun, 2012. "Weighted composite quantile estimation and variable selection method for censored regression model," Statistics & Probability Letters, Elsevier, vol. 82(3), pages 653-663.
    8. Zhixuan Fu & Shuangge Ma & Haiqun Lin & Chirag R. Parikh & Bingqing Zhou, 2017. "Penalized Variable Selection for Multi-center Competing Risks Data," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 9(2), pages 379-405, December.
    9. Guang Cheng & Hao Zhang & Zuofeng Shang, 2015. "Sparse and efficient estimation for partial spline models with increasing dimension," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 67(1), pages 93-127, February.
    10. Qu, Lianqiang & Song, Xinyuan & Sun, Liuquan, 2018. "Identification of local sparsity and variable selection for varying coefficient additive hazards models," Computational Statistics & Data Analysis, Elsevier, vol. 125(C), pages 119-135.
    11. Xingwei Tong & Xin He & Liuquan Sun & Jianguo Sun, 2009. "Variable Selection for Panel Count Data via Non‐Concave Penalized Estimating Function," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 36(4), pages 620-635, December.
    12. Michael R. Wierzbicki & Li-Bing Guo & Qing-Tao Du & Wensheng Guo, 2014. "Sparse Semiparametric Nonlinear Model With Application to Chromatographic Fingerprints," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(508), pages 1339-1349, December.
    13. Honda, Toshio & Yabe, Ryota, 2017. "Variable selection and structure identification for varying coefficient Cox models," Journal of Multivariate Analysis, Elsevier, vol. 161(C), pages 103-122.
    14. Engler David & Li Yi, 2009. "Survival Analysis with High-Dimensional Covariates: An Application in Microarray Studies," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-24, February.
    15. Pamela A. Shaw & Ross L. Prentice, 2012. "Hazard Ratio Estimation for Biomarker-Calibrated Dietary Exposures," Biometrics, The International Biometric Society, vol. 68(2), pages 397-407, June.
    16. Lian, Heng & Li, Jianbo & Tang, Xingyu, 2014. "SCAD-penalized regression in additive partially linear proportional hazards models with an ultra-high-dimensional linear part," Journal of Multivariate Analysis, Elsevier, vol. 125(C), pages 50-64.
    17. Hao, Meiling & Lin, Yunyuan & Zhao, Xingqiu, 2016. "A relative error-based approach for variable selection," Computational Statistics & Data Analysis, Elsevier, vol. 103(C), pages 250-262.
    18. Hu, Yuao & Lian, Heng, 2013. "Variable selection in a partially linear proportional hazards model with a diverging dimensionality," Statistics & Probability Letters, Elsevier, vol. 83(1), pages 61-69.
    19. Jianbo Li & Yuan Li & Riquan Zhang, 2017. "B spline variable selection for the single index models," Statistical Papers, Springer, vol. 58(3), pages 691-706, September.
    20. Li, Jianbo & Gu, Minggao, 2012. "Adaptive LASSO for general transformation models with right censored data," Computational Statistics & Data Analysis, Elsevier, vol. 56(8), pages 2583-2597.
    21. Liuquan Sun & Shuwei Li & Lianming Wang & Xinyuan Song & Xuemei Sui, 2022. "Simultaneous variable selection in regression analysis of multivariate interval‐censored data," Biometrics, The International Biometric Society, vol. 78(4), pages 1402-1413, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bla:biomet:v:77:y:2021:i:3:p:956-969. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Wiley Content Delivery (email available below). General contact details of provider: http://www.blackwellpublishing.com/journal.asp?ref=0006-341X .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.