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Sparse Semiparametric Nonlinear Model With Application to Chromatographic Fingerprints

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  • Michael R. Wierzbicki
  • Li-Bing Guo
  • Qing-Tao Du
  • Wensheng Guo

Abstract

Traditional Chinese herbal medications (TCHMs) are composed of a multitude of compounds and the identification of their active composition is an important area of research. Chromatography provides a visual representation of a TCHM sample's composition by outputting a curve characterized by spikes corresponding to compounds in the sample. Across different experimental conditions, the location of the spikes can be shifted, preventing direct comparison of curves and forcing compound identification to be possible only within each experiment. In this article, we propose a sparse semiparametric nonlinear modeling framework for the establishment of a standardized chromatographic fingerprint. Data-driven basis expansion is used to model the common shape of the curves, while a parametric time warping function registers across individual curves. Penalized weighted least-squares with the adaptive lasso penalty provides a unified criterion for registration, model selection, and estimation. Furthermore, the adaptive lasso estimators possess attractive sampling properties. A back-fitting algorithm is proposed for estimation. Performance is assessed through simulation and we apply the model to chromatographic data of rhubarb collected from different experimental conditions and establish a standardized fingerprint as a first step in TCHM research.

Suggested Citation

  • Michael R. Wierzbicki & Li-Bing Guo & Qing-Tao Du & Wensheng Guo, 2014. "Sparse Semiparametric Nonlinear Model With Application to Chromatographic Fingerprints," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(508), pages 1339-1349, December.
    • Handle: RePEc:taf:jnlasa:v:109:y:2014:i:508:p:1339-1349
    DOI: 10.1080/01621459.2013.836969
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    References listed on IDEAS

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    1. Huaihou Chen & Donglin Zeng & Yuanjia Wang, 2017. "Penalized nonlinear mixed effects model to identify biomarkers that predict disease progression," Biometrics, The International Biometric Society, vol. 73(4), pages 1343-1354, December.

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