A novel statistical method for modeling covariate effects in bisulfite sequencing derived measures of DNA methylation
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DOI: 10.1111/biom.13307
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- Jelle J. Goeman & Sara A. Van De Geer & Hans C. Van Houwelingen, 2006. "Testing against a high dimensional alternative," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(3), pages 477-493, June.
- Ryan Lister & Mattia Pelizzola & Robert H. Dowen & R. David Hawkins & Gary Hon & Julian Tonti-Filippini & Joseph R. Nery & Leonard Lee & Zhen Ye & Que-Minh Ngo & Lee Edsall & Jessica Antosiewicz-Bourg, 2009. "Human DNA methylomes at base resolution show widespread epigenomic differences," Nature, Nature, vol. 462(7271), pages 315-322, November.
- D. Oakes, 1999. "Direct calculation of the information matrix via the EM," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(2), pages 479-482, April.
- Brendan Maher, 2008. "Personal genomes: The case of the missing heritability," Nature, Nature, vol. 456(7218), pages 18-21, November.
- Simon N. Wood, 2011. "Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(1), pages 3-36, January.
- Farhad Shokoohi & David A. Stephens & Guillaume Bourque & Tomi Pastinen & Celia M. T. Greenwood & Aurélie Labbe, 2019. "A hidden markov model for identifying differentially methylated sites in bisulfite sequencing data," Biometrics, The International Biometric Society, vol. 75(1), pages 210-221, March.
- Simon N. Wood & Matteo Fasiolo, 2017. "A generalized Fellner‐Schall method for smoothing parameter optimization with application to Tweedie location, scale and shape models," Biometrics, The International Biometric Society, vol. 73(4), pages 1071-1081, December.
- Andrew P. Feinberg, 2007. "Phenotypic plasticity and the epigenetics of human disease," Nature, Nature, vol. 447(7143), pages 433-440, May.
- Simon N. Wood & Natalya Pya & Benjamin Säfken, 2016. "Smoothing Parameter and Model Selection for General Smooth Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(516), pages 1548-1563, October.
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