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Accurate structure prediction of biomolecular interactions with AlphaFold 3
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- Cornelia Sala & Martin Würtz & Enrico Salvatore Atorino & Annett Neuner & Patrick Partscht & Thomas Hoffmann & Sebastian Eustermann & Elmar Schiebel, 2024. "An interaction network of inner centriole proteins organised by POC1A-POC1B heterodimer crosslinks ensures centriolar integrity," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Jake Colautti & Huagang Tan & Nathan P. Bullen & Stephanie S. Thang & Dirk Hackenberger & Andrew C. Doxey & John C. Whitney, 2024. "A widespread accessory protein family diversifies the effector repertoire of the type VI secretion system spike," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Sanghyeon Choi & Youngjin Lee & Shinhye Park & Song Yee Jang & Jongbin Park & Do Won Oh & Su-Man Kim & Tae-Hwan Kim & Ga Seul Lee & Changyi Cho & Byoung Sik Kim & Donghan Lee & Eun-Hee Kim & Hae-Kap C, 2024. "Dissemination of pathogenic bacteria is reinforced by a MARTX toxin effector duet," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Xibing Xu & Roland Barriot & Bertille Voisin & Tom J. Arrowsmith & Ben Usher & Claude Gutierrez & Xue Han & Carine Pagès & Peter Redder & Tim R. Blower & Olivier Neyrolles & Pierre Genevaux, 2024. "Nucleotidyltransferase toxin MenT extends aminoacyl acceptor ends of serine tRNAs to control Mycobacterium tuberculosis growth," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Mingxin Guo & Qun Lian & Ye Mei & Wangwang Yang & Suna Zhao & Siyuan Zhang & Xinfeng Xing & Haixiang Zhang & Keying Gao & Wentong He & Zhitong Wang & Huan Wang & Jun Zhou & Lin Cheng & Zhigui Bao & Sa, 2024. "Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Yannick Weyer & Sinead I. Schwabl & Xuechen Tang & Astha Purwar & Konstantin Siegmann & Angela Ruepp & Theresia Dunzendorfer-Matt & Michael A. Widerin & Veronika Niedrist & Noa J. M. Mutsters & Maria , 2024. "The Dsc ubiquitin ligase complex identifies transmembrane degrons to degrade orphaned proteins at the Golgi," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Kehan Wu & Yingce Xia & Pan Deng & Renhe Liu & Yuan Zhang & Han Guo & Yumeng Cui & Qizhi Pei & Lijun Wu & Shufang Xie & Si Chen & Xi Lu & Song Hu & Jinzhi Wu & Chi-Kin Chan & Shawn Chen & Liangliang Z, 2024. "TamGen: drug design with target-aware molecule generation through a chemical language model," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Yida Jiang & Xinghe Zhang & Honggang Nie & Jianxiong Fan & Shuangshuang Di & Hui Fu & Xiu Zhang & Lijuan Wang & Chun Tang, 2024. "Dissecting diazirine photo-reaction mechanism for protein residue-specific cross-linking and distance mapping," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
- Tingting Li & Xuanbai Ren & Xiaoli Luo & Zhuole Wang & Zhenlu Li & Xiaoyan Luo & Jun Shen & Yun Li & Dan Yuan & Ruth Nussinov & Xiangxiang Zeng & Junfeng Shi & Feixiong Cheng, 2024. "A Foundation Model Identifies Broad-Spectrum Antimicrobial Peptides against Drug-Resistant Bacterial Infection," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Qianqian Ming & Daniel Antfolk & David A. Price & Anna Manturova & Elliot Medina & Srishti Singh & Charlotte Mason & Timothy H. Tran & Keiran S. M. Smalley & Daisy W. Leung & Vincent C. Luca, 2024. "Structural basis for mouse LAG3 interactions with the MHC class II molecule I-Ab," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Itxaso Anso & Samira Zouhir & Thibault Géry Sana & Petya Violinova Krasteva, 2024. "Structural basis for synthase activation and cellulose modification in the E. coli Type II Bcs secretion system," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Huiyu Cai & Zuobai Zhang & Mingkai Wang & Bozitao Zhong & Quanxiao Li & Yuxuan Zhong & Yanling Wu & Tianlei Ying & Jian Tang, 2024. "Pretrainable geometric graph neural network for antibody affinity maturation," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Xiaoting Shan & Ying Cai & Binyu Zhu & Lingli Zhou & Xujie Sun & Xiaoxuan Xu & Qi Yin & Dangge Wang & Yaping Li, 2024. "Rational strategies for improving the efficiency of design and discovery of nanomedicines," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
- Marius Klein & Klemens Wild & Irmgard Sinning, 2024. "Multi-protein assemblies orchestrate co-translational enzymatic processing on the human ribosome," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Anete Romanauska & Edvinas Stankunas & Maya Schuldiner & Alwin Köhler, 2024. "Seipin governs phosphatidic acid homeostasis at the inner nuclear membrane," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Timothy K. Soh & Sofia Ognibene & Saskia Sanders & Robin Schäper & Benedikt B. Kaufer & Jens B. Bosse, 2024. "A proteome-wide structural systems approach reveals insights into protein families of all human herpesviruses," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Juan M. Perez-Bertoldi & Yuanchang Zhao & Akanksha Thawani & Ahmet Yildiz & Eva Nogales, 2024. "HURP regulates Kif18A recruitment and activity to synergistically control microtubule dynamics," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Yinghui Chen & Yunxin Xu & Di Liu & Yaoguang Xing & Haipeng Gong, 2024. "An end-to-end framework for the prediction of protein structure and fitness from single sequence," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Michael Kugler & Felix J. Metzner & Gregor Witte & Karl-Peter Hopfner & Katja Lammens, 2024. "Phosphorylation-mediated conformational change regulates human SLFN11," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Lucas A. Defelipe & Katharina Veith & Osvaldo Burastero & Tatiana Kupriianova & Isabel Bento & Michal Skruzny & Knut Kölbel & Charlotte Uetrecht & Roland Thuenauer & Maria M. García-Alai, 2024. "Subtleties in Clathrin heavy chain binding boxes provide selectivity among adaptor proteins of budding yeast," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Maxime Zamba-Campero & Daniel Soliman & Huaxin Yu & Amanda G. Lasseter & Yuen-Yan Chang & Julia L. Silberman & Jun Liu & L. Aravind & Mollie W. Jewett & Gisela Storz & Philip P. Adams, 2024. "Broadly conserved FlgV controls flagellar assembly and Borrelia burgdorferi dissemination in mice," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
- Meili Li & Chengming Zhu & Zheng Xu & Mingjing Xu & Yan Kuang & Xinhao Hou & Xinya Huang & Mengqi Lv & Yongrui Liu & Yong Zhang & Ziyan Xu & Xu Han & Suman Wang & Yunyu Shi & Shouhong Guang & Fudong L, 2024. "Structural basis for C. elegans pairing center DNA binding specificity by the ZIM/HIM-8 family proteins," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Nathalie Béchon & Nitzan Tal & Avigail Stokar-Avihail & Alon Savidor & Meital Kupervaser & Sarah Melamed & Gil Amitai & Rotem Sorek, 2024. "Diversification of molecular pattern recognition in bacterial NLR-like proteins," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Yijia Cheng & Mark A. B. Kreutzberger & Jianting Han & Edward H. Egelman & Qin Cao, 2024. "Molecular architecture of the assembly of Bacillus spore coat protein GerQ revealed by cryo-EM," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
- Kenneth Bødkter Schou & Samuel Mandacaru & Muhammad Tahir & Nikola Tom & Ann-Sofie Nilsson & Jens S. Andersen & Matteo Tiberti & Elena Papaleo & Jiri Bartek, 2024. "Exploring the structural landscape of DNA maintenance proteins," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Devlina Chakravarty & Joseph W. Schafer & Ethan A. Chen & Joseph F. Thole & Leslie A. Ronish & Myeongsang Lee & Lauren L. Porter, 2024. "AlphaFold predictions of fold-switched conformations are driven by structure memorization," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Helena E. Sverak & Luke N. Yaeger & Liam J. Worrall & Condurache M. Vacariu & Amy J. Glenwright & Marija Vuckovic & Zayni-Dean Al Azawi & Ryan P. Lamers & Victoria A. Marko & Clarissa Skorupski & Arvi, 2024. "Cryo-EM characterization of the anydromuropeptide permease AmpG central to bacterial fitness and β-lactam antibiotic resistance," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Leishu Lin & Jiayuan Dong & Shun Xu & Jinman Xiao & Cong Yu & Fengfeng Niu & Zhiyi Wei, 2024. "Autoinhibition and relief mechanisms for MICAL monooxygenases in F-actin disassembly," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Paloma García Casas & Michela Rossini & Linnea Påvénius & Mezida Saeed & Nikita Arnst & Sonia Sonda & Tânia Fernandes & Irene D’Arsiè & Matteo Bruzzone & Valeria Berno & Andrea Raimondi & Maria Livia , 2024. "Simultaneous detection of membrane contact dynamics and associated Ca2+ signals by reversible chemogenetic reporters," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
- Amika Singla & Daniel J. Boesch & Ho Yee Joyce Fung & Chigozie Ngoka & Avery S. Enriquez & Ran Song & Daniel A. Kramer & Yan Han & Esther Banarer & Andrew Lemoff & Puneet Juneja & Daniel D. Billadeau , 2024. "Structural basis for Retriever-SNX17 assembly and endosomal sorting," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Yang Yue & Shu Li & Yihua Cheng & Lie Wang & Tingjun Hou & Zexuan Zhu & Shan He, 2024. "Integration of molecular coarse-grained model into geometric representation learning framework for protein-protein complex property prediction," Nature Communications, Nature, vol. 15(1), pages 1-14, December.