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Protein folding and misfolding

Citations

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Cited by:

  1. Weihong Zhang & Debabani Ganguly & Jianhan Chen, 2012. "Residual Structures, Conformational Fluctuations, and Electrostatic Interactions in the Synergistic Folding of Two Intrinsically Disordered Proteins," PLOS Computational Biology, Public Library of Science, vol. 8(1), pages 1-15, January.
  2. Espinoza Ortiz, J.S. & Dias, Cristiano L., 2018. "Cooperative fibril model: Native, amyloid-like fibril and unfolded states of proteins," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 511(C), pages 154-165.
  3. Qi Wang & Joshua L Johnson & Nathalie YR Agar & Jeffrey N Agar, 2008. "Protein Aggregation and Protein Instability Govern Familial Amyotrophic Lateral Sclerosis Patient Survival," PLOS Biology, Public Library of Science, vol. 6(7), pages 1-19, July.
  4. Minkoo Ahn & Tomasz Włodarski & Alkistis Mitropoulou & Sammy H. S. Chan & Haneesh Sidhu & Elena Plessa & Thomas A. Becker & Nediljko Budisa & Christopher A. Waudby & Roland Beckmann & Anaïs M. E. Cass, 2022. "Modulating co-translational protein folding by rational design and ribosome engineering," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  5. Guosheng Chen & Linjing Tong & Siming Huang & Shuyao Huang & Fang Zhu & Gangfeng Ouyang, 2022. "Hydrogen-bonded organic framework biomimetic entrapment allowing non-native biocatalytic activity in enzyme," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
  6. Adrian H Elcock, 2006. "Molecular Simulations of Cotranslational Protein Folding: Fragment Stabilities, Folding Cooperativity, and Trapping in the Ribosome," PLOS Computational Biology, Public Library of Science, vol. 2(7), pages 1-18, July.
  7. Jiyong Park & Byungnam Kahng & Wonmuk Hwang, 2009. "Thermodynamic Selection of Steric Zipper Patterns in the Amyloid Cross-β Spine," PLOS Computational Biology, Public Library of Science, vol. 5(9), pages 1-17, September.
  8. Pengfei Tian & Kresten Lindorff-Larsen & Wouter Boomsma & Mogens Høgh Jensen & Daniel Erik Otzen, 2016. "A Monte Carlo Study of the Early Steps of Functional Amyloid Formation," PLOS ONE, Public Library of Science, vol. 11(1), pages 1-18, January.
  9. Mookyung Cheon & Iksoo Chang & Sandipan Mohanty & Leila M Luheshi & Christopher M Dobson & Michele Vendruscolo & Giorgio Favrin, 2007. "Structural Reorganisation and Potential Toxicity of Oligomeric Species Formed during the Assembly of Amyloid Fibrils," PLOS Computational Biology, Public Library of Science, vol. 3(9), pages 1-12, September.
  10. Arthur Fischbach & Angela Johns & Kara L. Schneider & Xinxin Hao & Peter Tessarz & Thomas Nyström, 2023. "Artificial Hsp104-mediated systems for re-localizing protein aggregates," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  11. Jian Tian & Jaie C Woodard & Anna Whitney & Eugene I Shakhnovich, 2015. "Thermal Stabilization of Dihydrofolate Reductase Using Monte Carlo Unfolding Simulations and Its Functional Consequences," PLOS Computational Biology, Public Library of Science, vol. 11(4), pages 1-27, April.
  12. Wen-Ting Chu & Ji-Long Zhang & Qing-Chuan Zheng & Lin Chen & Hong-Xing Zhang, 2013. "Insights into the Folding and Unfolding Processes of Wild-Type and Mutated SH3 Domain by Molecular Dynamics and Replica Exchange Molecular Dynamics Simulations," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-9, May.
  13. Predrag Kukic & Arvind Kannan & Maurits J J Dijkstra & Sanne Abeln & Carlo Camilloni & Michele Vendruscolo, 2015. "Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations," PLOS Computational Biology, Public Library of Science, vol. 11(10), pages 1-19, October.
  14. Noah S Bieler & Tuomas P J Knowles & Daan Frenkel & Robert Vácha, 2012. "Connecting Macroscopic Observables and Microscopic Assembly Events in Amyloid Formation Using Coarse Grained Simulations," PLOS Computational Biology, Public Library of Science, vol. 8(10), pages 1-10, October.
  15. Allen W Bryan Jr. & Matthew Menke & Lenore J Cowen & Susan L Lindquist & Bonnie Berger, 2009. "BETASCAN: Probable β-amyloids Identified by Pairwise Probabilistic Analysis," PLOS Computational Biology, Public Library of Science, vol. 5(3), pages 1-11, March.
  16. Kübra Kaygisiz & Lena Rauch-Wirth & Arghya Dutta & Xiaoqing Yu & Yuki Nagata & Tristan Bereau & Jan Münch & Christopher V. Synatschke & Tanja Weil, 2023. "Data-mining unveils structure–property–activity correlation of viral infectivity enhancing self-assembling peptides," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
  17. Jaya C Jose & Prathit Chatterjee & Neelanjana Sengupta, 2014. "Cross Dimerization of Amyloid-β and αSynuclein Proteins in Aqueous Environment: A Molecular Dynamics Simulations Study," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-13, September.
  18. Matthias M. Schneider & Saurabh Gautam & Therese W. Herling & Ewa Andrzejewska & Georg Krainer & Alyssa M. Miller & Victoria A. Trinkaus & Quentin A. E. Peter & Francesco Simone Ruggeri & Michele Vend, 2021. "The Hsc70 disaggregation machinery removes monomer units directly from α-synuclein fibril ends," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
  19. Sanne Abeln & Michele Vendruscolo & Christopher M Dobson & Daan Frenkel, 2014. "A Simple Lattice Model That Captures Protein Folding, Aggregation and Amyloid Formation," PLOS ONE, Public Library of Science, vol. 9(1), pages 1-8, January.
  20. Morten S Dueholm & Daniel Otzen & Per Halkjær Nielsen, 2013. "Evolutionary Insight into the Functional Amyloids of the Pseudomonads," PLOS ONE, Public Library of Science, vol. 8(10), pages 1-1, October.
  21. Eri Chatani & Yutaro Tsuchisaka & Yuki Masuda & Roumiana Tsenkova, 2014. "Water Molecular System Dynamics Associated with Amyloidogenic Nucleation as Revealed by Real Time Near Infrared Spectroscopy and Aquaphotomics," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-10, July.
  22. Carlos Família & Sarah R Dennison & Alexandre Quintas & David A Phoenix, 2015. "Prediction of Peptide and Protein Propensity for Amyloid Formation," PLOS ONE, Public Library of Science, vol. 10(8), pages 1-16, August.
  23. Sheng Chen & Anuradhika Puri & Braxton Bell & Joseph Fritsche & Hector H. Palacios & Maurie Balch & Macy L. Sprunger & Matthew K. Howard & Jeremy J. Ryan & Jessica N. Haines & Gary J. Patti & Albert A, 2024. "HTRA1 disaggregates α-synuclein amyloid fibrils and converts them into non-toxic and seeding incompetent species," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
  24. Bente Vestergaard & Minna Groenning & Manfred Roessle & Jette S Kastrup & Marco van de Weert & James M Flink & Sven Frokjaer & Michael Gajhede & Dmitri I Svergun, 2007. "A Helical Structural Nucleus Is the Primary Elongating Unit of Insulin Amyloid Fibrils," PLOS Biology, Public Library of Science, vol. 5(5), pages 1-9, May.
  25. Morten S Dueholm & Mads Albertsen & Daniel Otzen & Per Halkjær Nielsen, 2012. "Curli Functional Amyloid Systems Are Phylogenetically Widespread and Display Large Diversity in Operon and Protein Structure," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-10, December.
  26. Corina N. D’Alessandro-Gabazza & Taro Yasuma & Tetsu Kobayashi & Masaaki Toda & Ahmed M. Abdel-Hamid & Hajime Fujimoto & Osamu Hataji & Hiroki Nakahara & Atsuro Takeshita & Kota Nishihama & Tomohito O, 2022. "Inhibition of lung microbiota-derived proapoptotic peptides ameliorates acute exacerbation of pulmonary fibrosis," Nature Communications, Nature, vol. 13(1), pages 1-23, December.
  27. Stefan Auer & Filip Meersman & Christopher M Dobson & Michele Vendruscolo, 2008. "A Generic Mechanism of Emergence of Amyloid Protofilaments from Disordered Oligomeric Aggregates," PLOS Computational Biology, Public Library of Science, vol. 4(11), pages 1-7, November.
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