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Estimation in the Semiparametric Accelerated Failure Time Model With Missing Covariates: Improving Efficiency Through Augmentation

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  • Jon Arni Steingrimsson
  • Robert L. Strawderman

Abstract

This article considers linear regression with missing covariates and a right censored outcome. We first consider a general two-phase outcome sampling design, where full covariate information is only ascertained for subjects in phase two and sampling occurs under an independent Bernoulli sampling scheme with known subject-specific sampling probabilities that depend on phase one information (e.g., survival time, failure status and covariates). The semiparametric information bound is derived for estimating the regression parameter in this setting. We also introduce a more practical class of augmented estimators that is shown to improve asymptotic efficiency over simple but inefficient inverse probability of sampling weighted estimators. Estimation for known sampling weights and extensions to the case of estimated sampling weights are both considered. The allowance for estimated sampling weights permits covariates to be missing at random according to a monotone but unknown mechanism. The asymptotic properties of the augmented estimators are derived and simulation results demonstrate substantial efficiency improvements over simpler inverse probability of sampling weighted estimators in the indicated settings. With suitable modification, the proposed methodology can also be used to improve augmented estimators previously used for missing covariates in a Cox regression model. Supplementary materials for this article are available online.

Suggested Citation

  • Jon Arni Steingrimsson & Robert L. Strawderman, 2017. "Estimation in the Semiparametric Accelerated Failure Time Model With Missing Covariates: Improving Efficiency Through Augmentation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(519), pages 1221-1235, July.
  • Handle: RePEc:taf:jnlasa:v:112:y:2017:i:519:p:1221-1235
    DOI: 10.1080/01621459.2016.1205500
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    References listed on IDEAS

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    1. Zeng, Donglin & Lin, D.Y., 2007. "Efficient Estimation for the Accelerated Failure Time Model," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 1387-1396, December.
    2. Norman E. Breslow & Jon A. Wellner, 2007. "Weighted Likelihood for Semiparametric Models and Two‐phase Stratified Samples, with Application to Cox Regression," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 34(1), pages 86-102, March.
    3. Jianwen Cai & Donglin Zeng, 2007. "Power Calculation for Case–Cohort Studies with Nonrare Events," Biometrics, The International Biometric Society, vol. 63(4), pages 1288-1295, December.
    4. Michal Kulich & D.Y. Lin, 2004. "Improving the Efficiency of Relative-Risk Estimation in Case-Cohort Studies," Journal of the American Statistical Association, American Statistical Association, vol. 99, pages 832-844, January.
    5. Qi, Lihong & Wang, C.Y. & Prentice, Ross L., 2005. "Weighted Estimators for Proportional Hazards Regression With Missing Covariates," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 1250-1263, December.
    6. Zhezhen Jin, 2003. "Rank-based inference for the accelerated failure time model," Biometrika, Biometrika Trust, vol. 90(2), pages 341-353, June.
    7. Tianxi Cai & Yingye Zheng, 2013. "Resampling Procedures for Making Inference Under Nested Case--Control Studies," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(504), pages 1532-1544, December.
    8. Lynn M. Johnson & Robert L. Strawderman, 2009. "Induced smoothing for the semiparametric accelerated failure time model: asymptotics and extensions to clustered data," Biometrika, Biometrika Trust, vol. 96(3), pages 577-590.
    9. Xiaodong Luo & Wei Yann Tsai & Qiang Xu, 2009. "Pseudo-partial likelihood estimators for the Cox regression model with missing covariates," Biometrika, Biometrika Trust, vol. 96(3), pages 617-633.
    10. Donglin Zeng & D. Y. Lin, 2014. "Efficient Estimation of Semiparametric Transformation Models for Two-Phase Cohort Studies," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(505), pages 371-383, March.
    11. C. Y. Wang & Hua Yun Chen, 2001. "Augmented Inverse Probability Weighted Estimator for Cox Missing Covariate Regression," Biometrics, The International Biometric Society, vol. 57(2), pages 414-419, June.
    12. Bin Nan & Menggang Yu & John D. Kalbfleisch, 2006. "Censored linear regression for case-cohort studies," Biometrika, Biometrika Trust, vol. 93(4), pages 747-762, December.
    13. Xu, Qiang & Paik, Myunghee Cho & Luo, Xiaodong & Tsai, Wei-Yann, 2009. "Reweighting Estimators for Cox Regression With Missing Covariates," Journal of the American Statistical Association, American Statistical Association, vol. 104(487), pages 1155-1167.
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