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Adaptive bi-level variable selection for multivariate failure time model with a diverging number of covariates

Author

Listed:
  • Kaida Cai

    (Southeast University
    University of Calgary)

  • Hua Shen

    (University of Calgary)

  • Xuewen Lu

    (University of Calgary)

Abstract

In this study we propose an adaptive bi-level variable selection method to analyze multivariate failure time data. In the regression setting, we treat the coefficients corresponding to the same predictor variable as a natural group and then consider variable selection at the group level and individual level simultaneously. By imitating the group variable selection procedure with adaptive bi-level penalty, the proposed variable selection method can select a predictor variable at two different levels allowing different covariate effects for different event types: the group level where the predictor is important to all failure types, and the individual level where the predictor is only important to some failure types. An algorithm based on cycle coordinate descent is developed to carry out the proposed method. Based on the simulation results, our method outperforms the classical penalty methods, especially in removing unimportant variables for different failure types. We obtain the asymptotic oracle properties of the proposed variable selection method in the case of a diverging number of covariates. We construct a generalized cross-validation method for the tuning parameter selection and assess model performance using model errors. We also illustrate the proposed method using a real-life data set.

Suggested Citation

  • Kaida Cai & Hua Shen & Xuewen Lu, 2022. "Adaptive bi-level variable selection for multivariate failure time model with a diverging number of covariates," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 31(4), pages 968-993, December.
  • Handle: RePEc:spr:testjl:v:31:y:2022:i:4:d:10.1007_s11749-022-00809-y
    DOI: 10.1007/s11749-022-00809-y
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    References listed on IDEAS

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    1. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
    2. Lukas Meier & Sara Van De Geer & Peter Bühlmann, 2008. "The group lasso for logistic regression," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(1), pages 53-71, February.
    3. P. Tseng, 2001. "Convergence of a Block Coordinate Descent Method for Nondifferentiable Minimization," Journal of Optimization Theory and Applications, Springer, vol. 109(3), pages 475-494, June.
    4. Limin X. Clegg & Jianwen Cai & Pranab K. Sen, 1999. "A Marginal Mixed Baseline Hazards Model for Multivariate Failure Time Data," Biometrics, The International Biometric Society, vol. 55(3), pages 805-812, September.
    5. Wang, Hansheng & Leng, Chenlei, 2008. "A note on adaptive group lasso," Computational Statistics & Data Analysis, Elsevier, vol. 52(12), pages 5277-5286, August.
    6. Jian Huang & Shuange Ma & Huiliang Xie & Cun-Hui Zhang, 2009. "A group bridge approach for variable selection," Biometrika, Biometrika Trust, vol. 96(2), pages 339-355.
    7. S. Wang & B. Nan & N. Zhu & J. Zhu, 2009. "Hierarchically penalized Cox regression with grouped variables," Biometrika, Biometrika Trust, vol. 96(2), pages 307-322.
    8. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    9. Liu Jicai & Riquan Zhang & Weihua Zhao & Yazhao Lv, 2016. "Variable selection in partially linear hazard regression for multivariate failure time data," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 28(2), pages 375-394, June.
    10. Niu, Yi & Peng, Yingwei, 2014. "Marginal regression analysis of clustered failure time data with a cure fraction," Journal of Multivariate Analysis, Elsevier, vol. 123(C), pages 129-142.
    11. Liu, Jicai & Zhang, Riquan & Zhao, Weihua & Lv, Yazhao, 2015. "Variable selection in semiparametric hazard regression for multivariate survival data," Journal of Multivariate Analysis, Elsevier, vol. 142(C), pages 26-40.
    12. Benjamin Poignard, 2020. "Asymptotic theory of the adaptive Sparse Group Lasso," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 72(1), pages 297-328, February.
    13. Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
    14. Jianwen Cai & Jianqing Fan & Runze Li & Haibo Zhou, 2005. "Variable selection for multivariate failure time data," Biometrika, Biometrika Trust, vol. 92(2), pages 303-316, June.
    15. Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
    16. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
    17. Zhaozhi Fan & Xiao-Feng Wang, 2009. "Marginal hazards model for multivariate failure time data with auxiliary covariates," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 21(7), pages 771-786.
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