IDEAS home Printed from https://ideas.repec.org/a/spr/testjl/v31y2022i1d10.1007_s11749-021-00774-y.html
   My bibliography  Save this article

Bayesian semiparametric modeling of response mechanism for nonignorable missing data

Author

Listed:
  • Shonosuke Sugasawa

    (The University of Tokyo)

  • Kosuke Morikawa

    (Osaka University)

  • Keisuke Takahata

    (Keio University)

Abstract

Statistical inference with nonresponse is quite challenging, especially when the response mechanism is nonignorable. In this case, the validity of statistical inference depends on untestable correct specification of the response model. To avoid the misspecification, we propose semiparametric Bayesian estimation in which an outcome model is parametric, but the response model is semiparametric in that we do not assume any parametric form for the nonresponse variable. We adopt penalized spline methods to estimate the unknown function. We also consider a fully nonparametric approach to modeling the response mechanism by using radial basis function methods. Using Pólya–gamma data augmentation, we developed an efficient posterior computation algorithm via Gibbs sampling in which most full conditional distributions can be obtained in familiar forms. The performance of the proposed method is demonstrated in simulation studies and an application to longitudinal data.

Suggested Citation

  • Shonosuke Sugasawa & Kosuke Morikawa & Keisuke Takahata, 2022. "Bayesian semiparametric modeling of response mechanism for nonignorable missing data," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 31(1), pages 101-117, March.
  • Handle: RePEc:spr:testjl:v:31:y:2022:i:1:d:10.1007_s11749-021-00774-y
    DOI: 10.1007/s11749-021-00774-y
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s11749-021-00774-y
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.

    File URL: https://libkey.io/10.1007/s11749-021-00774-y?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Wang Miao & Eric J. Tchetgen Tchetgen, 2016. "On varieties of doubly robust estimators under missingness not at random with a shadow variable," Biometrika, Biometrika Trust, vol. 103(2), pages 475-482.
    2. Ted Chang & Phillip S. Kott, 2008. "Using calibration weighting to adjust for nonresponse under a plausible model," Biometrika, Biometrika Trust, vol. 95(3), pages 555-571.
    3. P. Diggle & M. G. Kenward, 1994. "Informative Drop‐Out in Longitudinal Data Analysis," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 43(1), pages 49-73, March.
    4. Nicholas G. Polson & James G. Scott & Jesse Windle, 2013. "Bayesian Inference for Logistic Models Using Pólya--Gamma Latent Variables," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(504), pages 1339-1349, December.
    5. Jun Shao & Lei Wang, 2016. "Semiparametric inverse propensity weighting for nonignorable missing data," Biometrika, Biometrika Trust, vol. 103(1), pages 175-187.
    6. Russell B. Millar, 2009. "Comparison of Hierarchical Bayesian Models for Overdispersed Count Data using DIC and Bayes' Factors," Biometrics, The International Biometric Society, vol. 65(3), pages 962-969, September.
    7. David J. Spiegelhalter & Nicola G. Best & Bradley P. Carlin & Angelika Van Der Linde, 2002. "Bayesian measures of model complexity and fit," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 64(4), pages 583-639, October.
    8. Qin J. & Leung D. & Shao J., 2002. "Estimation With Survey Data Under Nonignorable Nonresponse or Informative Sampling," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 193-200, March.
    9. Kim, Jae Kwang & Yu, Cindy Long, 2011. "A Semiparametric Estimation of Mean Functionals With Nonignorable Missing Data," Journal of the American Statistical Association, American Statistical Association, vol. 106(493), pages 157-165.
    10. repec:mpr:mprres:8160 is not listed on IDEAS
    11. Gong Tang, 2003. "Analysis of multivariate missing data with nonignorable nonresponse," Biometrika, Biometrika Trust, vol. 90(4), pages 747-764, December.
    12. Peisong Han, 2014. "Multiply Robust Estimation in Regression Analysis With Missing Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(507), pages 1159-1173, September.
    13. Jiwei Zhao & Jun Shao, 2015. "Semiparametric Pseudo-Likelihoods in Generalized Linear Models With Nonignorable Missing Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(512), pages 1577-1590, December.
    14. Gabriele B. Durrant & Chris Skinner, 2006. "Using data augmentation to correct for non‐ignorable non‐response when surrogate data are available: an application to the distribution of hourly pay," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 169(3), pages 605-623, July.
    15. Joseph G. Ibrahim & Stuart R. Lipsitz & Nick Horton, 2001. "Using auxiliary data for parameter estimation with non‐ignorably missing outcomes," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 50(3), pages 361-373.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Wang, Lei & Zhao, Puying & Shao, Jun, 2021. "Dimension-reduced semiparametric estimation of distribution functions and quantiles with nonignorable nonresponse," Computational Statistics & Data Analysis, Elsevier, vol. 156(C).
    2. Pengfei Li & Jing Qin & Yukun Liu, 2023. "Instability of inverse probability weighting methods and a remedy for nonignorable missing data," Biometrics, The International Biometric Society, vol. 79(4), pages 3215-3226, December.
    3. Li, Mengyan & Ma, Yanyuan & Zhao, Jiwei, 2022. "Efficient estimation in a partially specified nonignorable propensity score model," Computational Statistics & Data Analysis, Elsevier, vol. 174(C).
    4. Tianqing Liu & Xiaohui Yuan, 2020. "Doubly robust augmented-estimating-equations estimation with nonignorable nonresponse data," Statistical Papers, Springer, vol. 61(6), pages 2241-2270, December.
    5. Zhang, Jing & Wang, Qihua & Kang, Jian, 2020. "Feature screening under missing indicator imputation with non-ignorable missing response," Computational Statistics & Data Analysis, Elsevier, vol. 149(C).
    6. Puying Zhao & Hui Zhao & Niansheng Tang & Zhaohai Li, 2017. "Weighted composite quantile regression analysis for nonignorable missing data using nonresponse instrument," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 29(2), pages 189-212, April.
    7. Bindele, Huybrechts F. & Nguelifack, Brice M., 2019. "Generalized signed-rank estimation for regression models with non-ignorable missing responses," Computational Statistics & Data Analysis, Elsevier, vol. 139(C), pages 14-33.
    8. Xianwen Ding & Jiandong Chen & Xueping Chen, 2020. "Regularized quantile regression for ultrahigh-dimensional data with nonignorable missing responses," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 83(5), pages 545-568, July.
    9. Lei Wang & Wei Ma, 2021. "Improved empirical likelihood inference and variable selection for generalized linear models with longitudinal nonignorable dropouts," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 73(3), pages 623-647, June.
    10. Yujing Shao & Lei Wang, 2022. "Generalized partial linear models with nonignorable dropouts," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 85(2), pages 223-252, February.
    11. Liu, Tianqing & Yuan, Xiaohui & Sun, Jianguo, 2021. "Weighted rank estimation for nonparametric transformation models with nonignorable missing data," Computational Statistics & Data Analysis, Elsevier, vol. 153(C).
    12. Cui, Xia & Guo, Jianhua & Yang, Guangren, 2017. "On the identifiability and estimation of generalized linear models with parametric nonignorable missing data mechanism," Computational Statistics & Data Analysis, Elsevier, vol. 107(C), pages 64-80.
    13. Rui Duan & C. Jason Liang & Pamela Shaw & Cheng Yong Tang & Yong Chen, 2020. "Missing at Random or Not: A Semiparametric Testing Approach," Papers 2003.11181, arXiv.org.
    14. Bian, Yuan & Yi, Grace Y. & He, Wenqing, 2024. "A unified framework of analyzing missing data and variable selection using regularized likelihood," Computational Statistics & Data Analysis, Elsevier, vol. 194(C).
    15. Xiaojun Mao & Zhonglei Wang & Shu Yang, 2023. "Matrix completion under complex survey sampling," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 75(3), pages 463-492, June.
    16. Jiwei Zhao & Jun Shao, 2015. "Semiparametric Pseudo-Likelihoods in Generalized Linear Models With Nonignorable Missing Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(512), pages 1577-1590, December.
    17. Guo, Xu & Song, Lianlian & Fang, Yun & Zhu, Lixing, 2019. "Model checking for general linear regression with nonignorable missing response," Computational Statistics & Data Analysis, Elsevier, vol. 138(C), pages 1-12.
    18. Lyu Ni & Jun Shao, 2023. "Estimation with multivariate outcomes having nonignorable item nonresponse," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 75(1), pages 1-15, February.
    19. Hamori, Shigeyuki & Motegi, Kaiji & Zhang, Zheng, 2019. "Calibration estimation of semiparametric copula models with data missing at random," Journal of Multivariate Analysis, Elsevier, vol. 173(C), pages 85-109.
    20. Majid Mojirsheibani, 2022. "On the maximal deviation of kernel regression estimators with NMAR response variables," Statistical Papers, Springer, vol. 63(5), pages 1677-1705, October.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:testjl:v:31:y:2022:i:1:d:10.1007_s11749-021-00774-y. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.