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Weighted approximate Bayesian computation via Sanov’s theorem

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  • Cecilia Viscardi

    (Università di Firenze, DiSIA)

  • Michele Boreale

    (Università di Firenze, DiSIA)

  • Fabio Corradi

    (Università di Firenze, DiSIA)

Abstract

We consider the problem of sample degeneracy in Approximate Bayesian Computation. It arises when proposed values of the parameters, once given as input to the generative model, rarely lead to simulations resembling the observed data and are hence discarded. Such “poor” parameter proposals do not contribute at all to the representation of the parameter’s posterior distribution. This leads to a very large number of required simulations and/or a waste of computational resources, as well as to distortions in the computed posterior distribution. To mitigate this problem, we propose an algorithm, referred to as the Large Deviations Weighted Approximate Bayesian Computation algorithm, where, via Sanov’s Theorem, strictly positive weights are computed for all proposed parameters, thus avoiding the rejection step altogether. In order to derive a computable asymptotic approximation from Sanov’s result, we adopt the information theoretic “method of types” formulation of the method of Large Deviations, thus restricting our attention to models for i.i.d. discrete random variables. Finally, we experimentally evaluate our method through a proof-of-concept implementation.

Suggested Citation

  • Cecilia Viscardi & Michele Boreale & Fabio Corradi, 2021. "Weighted approximate Bayesian computation via Sanov’s theorem," Computational Statistics, Springer, vol. 36(4), pages 2719-2753, December.
  • Handle: RePEc:spr:compst:v:36:y:2021:i:4:d:10.1007_s00180-021-01093-4
    DOI: 10.1007/s00180-021-01093-4
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    References listed on IDEAS

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    1. Espen Bernton & Pierre E. Jacob & Mathieu Gerber & Christian P. Robert, 2019. "Approximate Bayesian computation with the Wasserstein distance," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 81(2), pages 235-269, April.
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    3. Buzbas, Erkan O. & Rosenberg, Noah A., 2015. "AABC: Approximate approximate Bayesian computation for inference in population-genetic models," Theoretical Population Biology, Elsevier, vol. 99(C), pages 31-42.
    4. Mark A. Beaumont & Jean-Marie Cornuet & Jean-Michel Marin & Christian P. Robert, 2009. "Adaptive approximate Bayesian computation," Biometrika, Biometrika Trust, vol. 96(4), pages 983-990.
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