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A modified generalized lasso algorithm to detect local spatial clusters for count data

Author

Listed:
  • Hosik Choi

    (Kyonggi University)

  • Eunjung Song

    (Inha University)

  • Seung-sik Hwang

    (Graduate School of Public Health, Seoul National University)

  • Woojoo Lee

    (Inha University)

Abstract

Detecting local spatial clusters for count data is an important task in spatial epidemiology. Two broad approaches—moving window and disease mapping methods—have been suggested in some of the literature to find clusters. However, the existing methods employ somewhat arbitrarily chosen tuning parameters, and the local clustering results are sensitive to the choices. In this paper, we propose a penalized likelihood method to overcome the limitations of existing local spatial clustering approaches for count data. We start with a Poisson regression model to accommodate any type of covariates, and formulate the clustering problem as a penalized likelihood estimation problem to find change points of intercepts in two-dimensional space. The cost of developing a new algorithm is minimized by modifying an existing least absolute shrinkage and selection operator algorithm. The computational details on the modifications are shown, and the proposed method is illustrated with Seoul tuberculosis data.

Suggested Citation

  • Hosik Choi & Eunjung Song & Seung-sik Hwang & Woojoo Lee, 2018. "A modified generalized lasso algorithm to detect local spatial clusters for count data," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 102(4), pages 537-563, October.
    • Handle: RePEc:spr:alstar:v:102:y:2018:i:4:d:10.1007_s10182-018-0318-7
    DOI: 10.1007/s10182-018-0318-7
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    References listed on IDEAS

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    1. Hunter D.R. & Lange K., 2004. "A Tutorial on MM Algorithms," The American Statistician, American Statistical Association, vol. 58, pages 30-37, February.
    2. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    3. Nancy R. Zhang & David O. Siegmund, 2007. "A Modified Bayes Information Criterion with Applications to the Analysis of Comparative Genomic Hybridization Data," Biometrics, The International Biometric Society, vol. 63(1), pages 22-32, March.
    4. Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2010. "Regularization Paths for Generalized Linear Models via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 33(i01).
    5. Julian Besag & Jeremy York & Annie Mollié, 1991. "Bayesian image restoration, with two applications in spatial statistics," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 43(1), pages 1-20, March.
    6. Robert Tibshirani & Michael Saunders & Saharon Rosset & Ji Zhu & Keith Knight, 2005. "Sparsity and smoothness via the fused lasso," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(1), pages 91-108, February.
    7. Julian Besag & James Newell, 1991. "The Detection of Clusters in Rare Diseases," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 154(1), pages 143-155, January.
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