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Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration

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  • Yonggang Ji
  • Haifang Shi

Abstract

This paper presents a Bayesian analysis of linear mixed models for quantile regression based on a Cholesky decomposition for the covariance matrix of random effects. We develop a Bayesian shrinkage approach to quantile mixed regression models using a Bayesian adaptive lasso and an extended Bayesian adaptive group lasso. We also consider variable selection procedures for both fixed and random effects in a linear quantile mixed model via the Bayesian adaptive lasso and extended Bayesian adaptive group lasso with spike and slab priors. To improve mixing of the Markov chains, a simple and efficient partially collapsed Gibbs sampling algorithm is developed for posterior inference. Simulation experiments and an application to the Age-Related Macular Degeneration Trial data to demonstrate the proposed methods.

Suggested Citation

  • Yonggang Ji & Haifang Shi, 2020. "Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration," PLOS ONE, Public Library of Science, vol. 15(10), pages 1-34, October.
  • Handle: RePEc:plo:pone00:0241197
    DOI: 10.1371/journal.pone.0241197
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    References listed on IDEAS

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