IDEAS home Printed from https://ideas.repec.org/a/plo/pone00/0114522.html
   My bibliography  Save this article

Inferring Behavioral States of Grazing Livestock from High-Frequency Position Data Alone

Author

Listed:
  • Hermel Homburger
  • Manuel K Schneider
  • Sandra Hilfiker
  • Andreas Lüscher

Abstract

Studies of animal behavior are crucial to understanding animal-ecosystem interactions, but require substantial efforts in visual observation or sensor measurement. We investigated how classifying behavioral states of grazing livestock using global positioning data alone depends on the classification approach, the preselection of training data, and the number and type of movement metrics. Positions of grazing cows were collected at intervals of 20 seconds in six upland areas in Switzerland along with visual observations of animal behavior for comparison. A total of 87 linear and cumulative distance metrics and 15 turning angle metrics across multiple time steps were used to classify position data into the behavioral states of walking, grazing, and resting. Five random forest classification models, a linear discriminant analysis, a support vector machine, and a state-space model were evaluated. The most accurate classification of the observed behavioral states in an independent validation dataset was 83%, obtained using random forest with all available movement metrics. However, the state-specific accuracy was highly unequal (walking: 36%, grazing: 95%, resting: 58%). Random undersampling led to a prediction accuracy of 77%, with more balanced state-specific accuracies (walking: 68%, grazing: 82%, resting: 68%). The other evaluated machine-learning approaches had lower classification accuracies. The state-space model, based on distance to the preceding position and turning angle, produced a relatively low accuracy of 64%, slightly lower than a random forest model with the same predictor variables. Given the successful classification of behavioral states, our study promotes the more frequent use of global positioning data alone for animal behavior studies under the condition that data is collected at high frequency and complemented by context-specific behavioral observations. Machine-learning algorithms, notably random forest, were found very useful for classification and easy to implement. Moreover, the use of measures across multiple time steps is clearly necessary for a satisfactory classification.

Suggested Citation

  • Hermel Homburger & Manuel K Schneider & Sandra Hilfiker & Andreas Lüscher, 2014. "Inferring Behavioral States of Grazing Livestock from High-Frequency Position Data Alone," PLOS ONE, Public Library of Science, vol. 9(12), pages 1-22, December.
  • Handle: RePEc:plo:pone00:0114522
    DOI: 10.1371/journal.pone.0114522
    as

    Download full text from publisher

    File URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0114522
    Download Restriction: no

    File URL: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0114522&type=printable
    Download Restriction: no

    File URL: https://libkey.io/10.1371/journal.pone.0114522?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Claire M Postlethwaite & Todd E Dennis, 2013. "Effects of Temporal Resolution on an Inferential Model of Animal Movement," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-11, May.
    2. Hapfelmeier, A. & Ulm, K., 2013. "A new variable selection approach using Random Forests," Computational Statistics & Data Analysis, Elsevier, vol. 60(C), pages 50-69.
    3. Karatzoglou, Alexandros & Smola, Alexandros & Hornik, Kurt & Zeileis, Achim, 2004. "kernlab - An S4 Package for Kernel Methods in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 11(i09).
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Jorge A Vázquez Diosdado & Zoe E Barker & Holly R Hodges & Jonathan R Amory & Darren P Croft & Nick J Bell & Edward A Codling, 2018. "Space-use patterns highlight behavioural differences linked to lameness, parity, and days in milk in barn-housed dairy cows," PLOS ONE, Public Library of Science, vol. 13(12), pages 1-23, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Tsukioka, Yasutomo & Yanagi, Junya & Takada, Teruko, 2018. "Investor sentiment extracted from internet stock message boards and IPO puzzles," International Review of Economics & Finance, Elsevier, vol. 56(C), pages 205-217.
    2. Daniel J. Luckett & Eric B. Laber & Samer S. El‐Kamary & Cheng Fan & Ravi Jhaveri & Charles M. Perou & Fatma M. Shebl & Michael R. Kosorok, 2021. "Receiver operating characteristic curves and confidence bands for support vector machines," Biometrics, The International Biometric Society, vol. 77(4), pages 1422-1430, December.
    3. Liangyuan Hu & Lihua Li, 2022. "Using Tree-Based Machine Learning for Health Studies: Literature Review and Case Series," IJERPH, MDPI, vol. 19(23), pages 1-13, December.
    4. Grabisch, Michel & Kojadinovic, Ivan & Meyer, Patrick, 2008. "A review of methods for capacity identification in Choquet integral based multi-attribute utility theory: Applications of the Kappalab R package," European Journal of Operational Research, Elsevier, vol. 186(2), pages 766-785, April.
    5. Weijun Wang & Dan Zhao & Liguo Fan & Yulong Jia, 2019. "Study on Icing Prediction of Power Transmission Lines Based on Ensemble Empirical Mode Decomposition and Feature Selection Optimized Extreme Learning Machine," Energies, MDPI, vol. 12(11), pages 1-21, June.
    6. Bellotti, Anthony & Brigo, Damiano & Gambetti, Paolo & Vrins, Frédéric, 2021. "Forecasting recovery rates on non-performing loans with machine learning," International Journal of Forecasting, Elsevier, vol. 37(1), pages 428-444.
    7. Riza, Lala Septem & Bergmeir, Christoph & Herrera, Francisco & Benítez, José M., 2015. "frbs: Fuzzy Rule-Based Systems for Classification and Regression in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 65(i06).
    8. Karin Wolffhechel & Amanda C Hahn & Hanne Jarmer & Claire I Fisher & Benedict C Jones & Lisa M DeBruine, 2015. "Testing the Utility of a Data-Driven Approach for Assessing BMI from Face Images," PLOS ONE, Public Library of Science, vol. 10(10), pages 1-10, October.
    9. Silke Janitza & Ender Celik & Anne-Laure Boulesteix, 2018. "A computationally fast variable importance test for random forests for high-dimensional data," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 12(4), pages 885-915, December.
    10. Sameer Al-Dahidi & Piero Baraldi & Miriam Fresc & Enrico Zio & Lorenzo Montelatici, 2024. "Feature Selection by Binary Differential Evolution for Predicting the Energy Production of a Wind Plant," Energies, MDPI, vol. 17(10), pages 1-19, May.
    11. Andrea S Martinez-Vernon & James A Covington & Ramesh P Arasaradnam & Siavash Esfahani & Nicola O’Connell & Ioannis Kyrou & Richard S Savage, 2018. "An improved machine learning pipeline for urinary volatiles disease detection: Diagnosing diabetes," PLOS ONE, Public Library of Science, vol. 13(9), pages 1-20, September.
    12. Khamma, Thulasi Ram & Zhang, Yuming & Guerrier, Stéphane & Boubekri, Mohamed, 2020. "Generalized additive models: An efficient method for short-term energy prediction in office buildings," Energy, Elsevier, vol. 213(C).
    13. Lkhagvadorj Munkhdalai & Tsendsuren Munkhdalai & Oyun-Erdene Namsrai & Jong Yun Lee & Keun Ho Ryu, 2019. "An Empirical Comparison of Machine-Learning Methods on Bank Client Credit Assessments," Sustainability, MDPI, vol. 11(3), pages 1-23, January.
    14. Madhumita Sahoo & Aman Kasot & Anirban Dhar & Amlanjyoti Kar, 2018. "On Predictability of Groundwater Level in Shallow Wells Using Satellite Observations," Water Resources Management: An International Journal, Published for the European Water Resources Association (EWRA), Springer;European Water Resources Association (EWRA), vol. 32(4), pages 1225-1244, March.
    15. P. J. Zarco-Tejada & T. Poblete & C. Camino & V. Gonzalez-Dugo & R. Calderon & A. Hornero & R. Hernandez-Clemente & M. Román-Écija & M. P. Velasco-Amo & B. B. Landa & P. S. A. Beck & M. Saponari & D. , 2021. "Divergent abiotic spectral pathways unravel pathogen stress signals across species," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    16. Grubinger, Thomas & Zeileis, Achim & Pfeiffer, Karl-Peter, 2014. "evtree: Evolutionary Learning of Globally Optimal Classification and Regression Trees in R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 61(i01).
    17. Uwe Ligges & Sebastian Krey, 2011. "Feature clustering for instrument classification," Computational Statistics, Springer, vol. 26(2), pages 279-291, June.
    18. Arnout Van Messem & Andreas Christmann, 2010. "A review on consistency and robustness properties of support vector machines for heavy-tailed distributions," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 4(2), pages 199-220, September.
    19. Jacobi Liana & Kwok Chun Fung & Ramírez-Hassan Andrés & Nghiem Nhung, 2024. "Posterior Manifolds over Prior Parameter Regions: Beyond Pointwise Sensitivity Assessments for Posterior Statistics from MCMC Inference," Studies in Nonlinear Dynamics & Econometrics, De Gruyter, vol. 28(2), pages 403-434, April.
    20. Zhang, Jingjing & Dennis, Todd E. & Landers, Todd J. & Bell, Elizabeth & Perry, George L.W., 2017. "Linking individual-based and statistical inferential models in movement ecology: A case study with black petrels (Procellaria parkinsoni)," Ecological Modelling, Elsevier, vol. 360(C), pages 425-436.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0114522. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.