Core Microbial Functional Activities in Ocean Environments Revealed by Global Metagenomic Profiling Analyses
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0097338
Download full text from publisher
References listed on IDEAS
- Howard Ochman & Jeffrey G. Lawrence & Eduardo A. Groisman, 2000. "Lateral gene transfer and the nature of bacterial innovation," Nature, Nature, vol. 405(6784), pages 299-304, May.
- Shibu Yooseph & Kenneth H. Nealson & Douglas B. Rusch & John P. McCrow & Christopher L. Dupont & Maria Kim & Justin Johnson & Robert Montgomery & Steve Ferriera & Karen Beeson & Shannon J. Williamson , 2010. "Genomic and functional adaptation in surface ocean planktonic prokaryotes," Nature, Nature, vol. 468(7320), pages 60-66, November.
- Edward F. DeLong & David M. Karl, 2005. "Genomic perspectives in microbial oceanography," Nature, Nature, vol. 437(7057), pages 336-342, September.
- Kevin R. Arrigo, 2005. "Marine microorganisms and global nutrient cycles," Nature, Nature, vol. 437(7057), pages 349-355, September.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Auguères, Anne-Sophie & Loreau, Michel, 2016. "Biotic regulation of non-limiting nutrient pools and coupling of biogeochemical cycles," Ecological Modelling, Elsevier, vol. 334(C), pages 1-7.
- Tazzyman, Samuel J. & Bonhoeffer, Sebastian, 2013. "Fixation probability of mobile genetic elements such as plasmids," Theoretical Population Biology, Elsevier, vol. 90(C), pages 49-55.
- Aletheia Atzinger & Jeffrey G Lawrence, 2020. "Selection for ancient periodic motifs that do not impart DNA bending," PLOS Genetics, Public Library of Science, vol. 16(10), pages 1-25, October.
- João F Matias Rodrigues & Andreas Wagner, 2009. "Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks," PLOS Computational Biology, Public Library of Science, vol. 5(12), pages 1-11, December.
- Thomas J. Browning & C. Mark Moore, 2023. "Global analysis of ocean phytoplankton nutrient limitation reveals high prevalence of co-limitation," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
- Nils Giordano & Marinna Gaudin & Camille Trottier & Erwan Delage & Charlotte Nef & Chris Bowler & Samuel Chaffron, 2024. "Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Nara Figueroa-Bossi & Rocío Fernández-Fernández & Patricia Kerboriou & Philippe Bouloc & Josep Casadesús & María Antonia Sánchez-Romero & Lionello Bossi, 2024. "Transcription-driven DNA supercoiling counteracts H-NS-mediated gene silencing in bacterial chromatin," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Xiaoyu Shan & Rachel E. Szabo & Otto X. Cordero, 2023. "Mutation-induced infections of phage-plasmids," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
- Huawei Zhu & Liru Xu & Guodong Luan & Tao Zhan & Zepeng Kang & Chunli Li & Xuefeng Lu & Xueli Zhang & Zhiguang Zhu & Yanping Zhang & Yin Li, 2022. "A miniaturized bionic ocean-battery mimicking the structure of marine microbial ecosystems," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Brian D. Huang & Dowan Kim & Yongjoon Yu & Corey J. Wilson, 2024. "Engineering intelligent chassis cells via recombinase-based MEMORY circuits," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Nam Seon Kang & Kichul Cho & Sung Min An & Eun Song Kim & Hyunji Ki & Chung Hyeon Lee & Grace Choi & Ji Won Hong, 2022. "Taxonomic and Biochemical Characterization of Microalga Graesiella emersonii GEGS21 for Its Potential to Become Feedstock for Biofuels and Bioproducts," Energies, MDPI, vol. 15(22), pages 1-24, November.
- Ernestina Hauptfeld & Nikolaos Pappas & Sandra Iwaarden & Basten L. Snoek & Andrea Aldas-Vargas & Bas E. Dutilh & F. A. Bastiaan Meijenfeldt, 2024. "Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Rohan Maddamsetti & Yi Yao & Teng Wang & Junheng Gao & Vincent T. Huang & Grayson S. Hamrick & Hye-In Son & Lingchong You, 2024. "Duplicated antibiotic resistance genes reveal ongoing selection and horizontal gene transfer in bacteria," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
- Lashin, Sergey A. & Matushkin, Yury G. & Suslov, Valentin V. & Kolchanov, Nikolay A., 2012. "Computer modeling of genome complexity variation trends in prokaryotic communities under varying habitat conditions," Ecological Modelling, Elsevier, vol. 224(1), pages 124-129.
- Jennifer Kuzma & James Romanchek & Adam Kokotovich, 2008. "Upstream Oversight Assessment for Agrifood Nanotechnology: A Case Studies Approach," Risk Analysis, John Wiley & Sons, vol. 28(4), pages 1081-1098, August.
- Beckmann, Aike & Hense, Inga, 2017. "The impact of primary and export production on the formation of the secondary nitrite maximum: A model study," Ecological Modelling, Elsevier, vol. 359(C), pages 25-33.
- Tsakalakis, Ioannis & Pahlow, Markus & Oschlies, Andreas & Blasius, Bernd & Ryabov, Alexey B., 2018. "Diel light cycle as a key factor for modelling phytoplankton biogeography and diversity," Ecological Modelling, Elsevier, vol. 384(C), pages 241-248.
- Cosme, Nuno & Koski, Marja & Hauschild, Michael Z., 2015. "Exposure factors for marine eutrophication impacts assessment based on a mechanistic biological model," Ecological Modelling, Elsevier, vol. 317(C), pages 50-63.
- Cuncong Zhong & Anna Edlund & Youngik Yang & Jeffrey S McLean & Shibu Yooseph, 2016. "Metagenome and Metatranscriptome Analyses Using Protein Family Profiles," PLOS Computational Biology, Public Library of Science, vol. 12(7), pages 1-22, July.
- Jenny Wachter & Britney Cheff & Chad Hillman & Valentina Carracoi & David W. Dorward & Craig Martens & Kent Barbian & Glenn Nardone & L. Renee Olano & Margie Kinnersley & Patrick R. Secor & Patricia A, 2023. "Coupled induction of prophage and virulence factors during tick transmission of the Lyme disease spirochete," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0097338. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.