Genome-scale community modelling reveals conserved metabolic cross-feedings in epipelagic bacterioplankton communities
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-024-46374-w
Download full text from publisher
References listed on IDEAS
- Malte Herold & Susana Martínez Arbas & Shaman Narayanasamy & Abdul R. Sheik & Luise A. K. Kleine-Borgmann & Laura A. Lebrun & Benoît J. Kunath & Hugo Roume & Irina Bessarab & Rohan B. H. Williams & Jo, 2020. "Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
- Chirag Jain & Luis M. Rodriguez-R & Adam M. Phillippy & Konstantinos T. Konstantinidis & Srinivas Aluru, 2018. "High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries," Nature Communications, Nature, vol. 9(1), pages 1-8, December.
- Akshit Goyal & Tong Wang & Veronika Dubinkina & Sergei Maslov, 2021. "Ecology-guided prediction of cross-feeding interactions in the human gut microbiome," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
- T. J. Browning & E. P. Achterberg & J. C. Yong & I. Rapp & C. Utermann & A. Engel & C. M. Moore, 2017. "Iron limitation of microbial phosphorus acquisition in the tropical North Atlantic," Nature Communications, Nature, vol. 8(1), pages 1-7, August.
- Chris S. Smillie & Mark B. Smith & Jonathan Friedman & Otto X. Cordero & Lawrence A. David & Eric J. Alm, 2011. "Ecology drives a global network of gene exchange connecting the human microbiome," Nature, Nature, vol. 480(7376), pages 241-244, December.
- Kevin R. Arrigo, 2005. "Erratum: Marine microorganisms and global nutrient cycles," Nature, Nature, vol. 438(7064), pages 122-122, November.
- Qiyun Zhu & Uyen Mai & Wayne Pfeiffer & Stefan Janssen & Francesco Asnicar & Jon G. Sanders & Pedro Belda-Ferre & Gabriel A. Al-Ghalith & Evguenia Kopylova & Daniel McDonald & Tomasz Kosciolek & John , 2019. "Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea," Nature Communications, Nature, vol. 10(1), pages 1-14, December.
- David K. Ngugi & Silvia G. Acinas & Pablo Sánchez & Josep M. Gasol & Susana Agusti & David M. Karl & Carlos M. Duarte, 2023. "Abiotic selection of microbial genome size in the global ocean," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
- Lucas Paoli & Hans-Joachim Ruscheweyh & Clarissa C. Forneris & Florian Hubrich & Satria Kautsar & Agneya Bhushan & Alessandro Lotti & Quentin Clayssen & Guillem Salazar & Alessio Milanese & Charlotte , 2022. "Biosynthetic potential of the global ocean microbiome," Nature, Nature, vol. 607(7917), pages 111-118, July.
- Kevin R. Arrigo, 2005. "Marine microorganisms and global nutrient cycles," Nature, Nature, vol. 437(7057), pages 349-355, September.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Thomas J. Browning & C. Mark Moore, 2023. "Global analysis of ocean phytoplankton nutrient limitation reveals high prevalence of co-limitation," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
- Nam Seon Kang & Kichul Cho & Sung Min An & Eun Song Kim & Hyunji Ki & Chung Hyeon Lee & Grace Choi & Ji Won Hong, 2022. "Taxonomic and Biochemical Characterization of Microalga Graesiella emersonii GEGS21 for Its Potential to Become Feedstock for Biofuels and Bioproducts," Energies, MDPI, vol. 15(22), pages 1-24, November.
- Corentin Hochart & Lucas Paoli & Hans-Joachim Ruscheweyh & Guillem Salazar & Emilie Boissin & Sarah Romac & Julie Poulain & Guillaume Bourdin & Guillaume Iwankow & Clémentine Moulin & Maren Ziegler & , 2023. "Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Wenxiu Wang & Weizhi Song & Marwan E. Majzoub & Xiaoyuan Feng & Bu Xu & Jianchang Tao & Yuanqing Zhu & Zhiyong Li & Pei-Yuan Qian & Nicole S. Webster & Torsten Thomas & Lu Fan, 2024. "Decoupling of strain- and intrastrain-level interactions of microbiomes in a sponge holobiont," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Toby Kenney & Hong Gu & Tianshu Huang, 2021. "Poisson PCA: Poisson measurement error corrected PCA, with application to microbiome data," Biometrics, The International Biometric Society, vol. 77(4), pages 1369-1384, December.
- Gera, Anitha & Gayathri, R & Ezhilarasan, P & Ranga Rao, V & Ramana Murthy, M V, 2023. "Coupled physical-biogeochemical simulations of upwelling, ecological response to fresh water," Ecological Modelling, Elsevier, vol. 476(C).
- Vanessa R. Marcelino & Caitlin Welsh & Christian Diener & Emily L. Gulliver & Emily L. Rutten & Remy B. Young & Edward M. Giles & Sean M. Gibbons & Chris Greening & Samuel C. Forster, 2023. "Disease-specific loss of microbial cross-feeding interactions in the human gut," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
- Auguères, Anne-Sophie & Loreau, Michel, 2016. "Biotic regulation of non-limiting nutrient pools and coupling of biogeochemical cycles," Ecological Modelling, Elsevier, vol. 334(C), pages 1-7.
- Max E. Schön & Vasily V. Zlatogursky & Rohan P. Singh & Camille Poirier & Susanne Wilken & Varsha Mathur & Jürgen F. H. Strassert & Jarone Pinhassi & Alexandra Z. Worden & Patrick J. Keeling & Thijs J, 2021. "Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
- Jojo A. Prentice & Robert Weerd & Andrew A. Bridges, 2024. "Cell-lysis sensing drives biofilm formation in Vibrio cholerae," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
- Izabela Wolak & Małgorzata Czatzkowska & Monika Harnisz & Jan Paweł Jastrzębski & Łukasz Paukszto & Paulina Rusanowska & Ewa Felis & Ewa Korzeniewska, 2022. "Metagenomic Analysis of the Long-Term Synergistic Effects of Antibiotics on the Anaerobic Digestion of Cattle Manure," Energies, MDPI, vol. 15(5), pages 1-19, March.
- Natalie R. Cohen & Arianna I. Krinos & Riss M. Kell & Rebecca J. Chmiel & Dawn M. Moran & Matthew R. McIlvin & Paloma Z. Lopez & Alexander J. Barth & Joshua P. Stone & Brianna A. Alanis & Eric W. Chan, 2024. "Microeukaryote metabolism across the western North Atlantic Ocean revealed through autonomous underwater profiling," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Nenad Macesic & Jane Hawkey & Ben Vezina & Jessica A. Wisniewski & Hugh Cottingham & Luke V. Blakeway & Taylor Harshegyi & Katherine Pragastis & Gnei Zweena Badoordeen & Amanda Dennison & Denis W. Spe, 2023. "Genomic dissection of endemic carbapenem resistance reveals metallo-beta-lactamase dissemination through clonal, plasmid and integron transfer," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
- Minghui Cheng & Yingjie Xu & Xiao Cui & Xin Wei & Yundi Chang & Jun Xu & Cheng Lei & Lei Xue & Yifan Zheng & Zhang Wang & Lingtong Huang & Min Zheng & Hong Luo & Yuxin Leng & Chao Jiang, 2024. "Deep longitudinal lower respiratory tract microbiome profiling reveals genome-resolved functional and evolutionary dynamics in critical illness," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Hao Leng & Yinzhao Wang & Weishu Zhao & Stefan M. Sievert & Xiang Xiao, 2023. "Identification of a deep-branching thermophilic clade sheds light on early bacterial evolution," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- Jean-Sebastien Gounot & Minghao Chia & Denis Bertrand & Woei-Yuh Saw & Aarthi Ravikrishnan & Adrian Low & Yichen Ding & Amanda Hui Qi Ng & Linda Wei Lin Tan & Yik-Ying Teo & Henning Seedorf & Niranjan, 2022. "Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- Vincent Somerville & Nadine Thierer & Remo S. Schmidt & Alexandra Roetschi & Lauriane Braillard & Monika Haueter & Hélène Berthoud & Noam Shani & Ueli Ah & Florent Mazel & Philipp Engel, 2024. "Genomic and phenotypic imprints of microbial domestication on cheese starter cultures," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Senka Čaušević & Manupriyam Dubey & Marian Morales & Guillem Salazar & Vladimir Sentchilo & Nicolas Carraro & Hans-Joachim Ruscheweyh & Shinichi Sunagawa & Jan Roelof van der Meer, 2024. "Niche availability and competitive loss by facilitation control proliferation of bacterial strains intended for soil microbiome interventions," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Xianzhe Gong & Álvaro Rodríguez Río & Le Xu & Zhiyi Chen & Marguerite V. Langwig & Lei Su & Mingxue Sun & Jaime Huerta-Cepas & Valerie Anda & Brett J. Baker, 2022. "New globally distributed bacterial phyla within the FCB superphylum," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Jordy Evan Sulaiman & Jaron Thompson & Yili Qian & Eugenio I. Vivas & Christian Diener & Sean M. Gibbons & Nasia Safdar & Ophelia S. Venturelli, 2024. "Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-46374-w. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.