Principal Components Analysis of Population Admixture
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0040115
Download full text from publisher
References listed on IDEAS
- Chao Tian & Robert M Plenge & Michael Ransom & Annette Lee & Pablo Villoslada & Carlo Selmi & Lars Klareskog & Ann E Pulver & Lihong Qi & Peter K Gregersen & Michael F Seldin, 2008. "Analysis and Application of European Genetic Substructure Using 300 K SNP Information," PLOS Genetics, Public Library of Science, vol. 4(1), pages 1-11, January.
- Gil McVean, 2009. "A Genealogical Interpretation of Principal Components Analysis," PLOS Genetics, Public Library of Science, vol. 5(10), pages 1-10, October.
- Kai Yu & Zhaoming Wang & Qizhai Li & Sholom Wacholder & David J Hunter & Robert N Hoover & Stephen Chanock & Gilles Thomas, 2008. "Population Substructure and Control Selection in Genome-Wide Association Studies," PLOS ONE, Public Library of Science, vol. 3(7), pages 1-14, July.
- Jianzhong Ma & Christopher I Amos, 2010. "Theoretical Formulation of Principal Components Analysis to Detect and Correct for Population Stratification," PLOS ONE, Public Library of Science, vol. 5(9), pages 1-14, September.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Jason Sawler & Bruce Reisch & Mallikarjuna K Aradhya & Bernard Prins & Gan-Yuan Zhong & Heidi Schwaninger & Charles Simon & Edward Buckler & Sean Myles, 2013. "Genomics Assisted Ancestry Deconvolution in Grape," PLOS ONE, Public Library of Science, vol. 8(11), pages 1-1, November.
- Zheng, Xiuwen & Weir, Bruce S., 2016. "Eigenanalysis of SNP data with an identity by descent interpretation," Theoretical Population Biology, Elsevier, vol. 107(C), pages 65-76.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Zhaoming Wang & Allan Hildesheim & Sophia S Wang & Rolando Herrero & Paula Gonzalez & Laurie Burdette & Amy Hutchinson & Gilles Thomas & Stephen J Chanock & Kai Yu, 2010. "Genetic Admixture and Population Substructure in Guanacaste Costa Rica," PLOS ONE, Public Library of Science, vol. 5(10), pages 1-10, October.
- Jianzhong Ma & Christopher I Amos, 2012. "Investigation of Inversion Polymorphisms in the Human Genome Using Principal Components Analysis," PLOS ONE, Public Library of Science, vol. 7(7), pages 1-12, July.
- Zheng, Xiuwen & Weir, Bruce S., 2016. "Eigenanalysis of SNP data with an identity by descent interpretation," Theoretical Population Biology, Elsevier, vol. 107(C), pages 65-76.
- Estavoyer, Maxime & François, Olivier, 2022. "Theoretical analysis of principal components in an umbrella model of intraspecific evolution," Theoretical Population Biology, Elsevier, vol. 148(C), pages 11-21.
- Ralph, Peter L., 2019. "An empirical approach to demographic inference with genomic data," Theoretical Population Biology, Elsevier, vol. 127(C), pages 91-101.
- Peña-Malavera Andrea & Bruno Cecilia & Fernandez Elmer & Balzarini Monica, 2014. "Comparison of algorithms to infer genetic population structure from unlinked molecular markers," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(4), pages 391-402, August.
- Bryc, Katarzyna & Bryc, Wlodek & Silverstein, Jack W., 2013. "Separation of the largest eigenvalues in eigenanalysis of genotype data from discrete subpopulations," Theoretical Population Biology, Elsevier, vol. 89(C), pages 34-43.
- Kai Yu & Zhaoming Wang & Qizhai Li & Sholom Wacholder & David J Hunter & Robert N Hoover & Stephen Chanock & Gilles Thomas, 2008. "Population Substructure and Control Selection in Genome-Wide Association Studies," PLOS ONE, Public Library of Science, vol. 3(7), pages 1-14, July.
- Alexander Köhler & Marvin Kahra & Michael Breuß, 2024. "A First Approach to Quantum Logical Shape Classification Framework," Mathematics, MDPI, vol. 12(11), pages 1-21, May.
- Marie-Claude Babron & Marie de Tayrac & Douglas N Rutledge & Eleftheria Zeggini & Emmanuelle Génin, 2012. "Rare and Low Frequency Variant Stratification in the UK Population: Description and Impact on Association Tests," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-9, October.
- Priya Moorjani & Nick Patterson & Joel N Hirschhorn & Alon Keinan & Li Hao & Gil Atzmon & Edward Burns & Harry Ostrer & Alkes L Price & David Reich, 2011. "The History of African Gene Flow into Southern Europeans, Levantines, and Jews," PLOS Genetics, Public Library of Science, vol. 7(4), pages 1-13, April.
- Nagel, Mats, 2020. "Changing perspectives: Towards detailed phenotyping in genetics," Thesis Commons a4nz2, Center for Open Science.
- Luca Cornetti & Peter D. Fields & Louis Du Pasquier & Dieter Ebert, 2024. "Long-term balancing selection for pathogen resistance maintains trans-species polymorphisms in a planktonic crustacean," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Gavin Band & Quang Si Le & Luke Jostins & Matti Pirinen & Katja Kivinen & Muminatou Jallow & Fatoumatta Sisay-Joof & Kalifa Bojang & Margaret Pinder & Giorgio Sirugo & David J Conway & Vysaul Nyirongo, 2013. "Imputation-Based Meta-Analysis of Severe Malaria in Three African Populations," PLOS Genetics, Public Library of Science, vol. 9(5), pages 1-13, May.
- Buschbom, Jutta, 2018. "Exploring and validating statistical reliability in forensic conservation genetics," Thünen Reports 63, Johann Heinrich von Thünen Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries.
- Aman Agrawal & Alec M Chiu & Minh Le & Eran Halperin & Sriram Sankararaman, 2020. "Scalable probabilistic PCA for large-scale genetic variation data," PLOS Genetics, Public Library of Science, vol. 16(5), pages 1-19, May.
- Daniel John Lawson & Garrett Hellenthal & Simon Myers & Daniel Falush, 2012. "Inference of Population Structure using Dense Haplotype Data," PLOS Genetics, Public Library of Science, vol. 8(1), pages 1-16, January.
- Nagel, Mats, 2020. "Changing perspectives: Towards detailed phenotyping in genetics," Thesis Commons a4nz2_v1, Center for Open Science.
- Marina Muzzio & Josefina M B Motti & Paula B Paz Sepulveda & Muh-ching Yee & Thomas Cooke & María R Santos & Virginia Ramallo & Emma L Alfaro & Jose E Dipierri & Graciela Bailliet & Claudio M Bravi & , 2018. "Population structure in Argentina," PLOS ONE, Public Library of Science, vol. 13(5), pages 1-13, May.
- Pei-Kuan Cong & Wei-Yang Bai & Jin-Chen Li & Meng-Yuan Yang & Saber Khederzadeh & Si-Rui Gai & Nan Li & Yu-Heng Liu & Shi-Hui Yu & Wei-Wei Zhao & Jun-Quan Liu & Yi Sun & Xiao-Wei Zhu & Pian-Pian Zhao , 2022. "Genomic analyses of 10,376 individuals in the Westlake BioBank for Chinese (WBBC) pilot project," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0040115. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.