Canonical Correlation Analysis for Gene-Based Pleiotropy Discovery
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.1003876
Download full text from publisher
References listed on IDEAS
- Leonardo Bottolo & Marc Chadeau-Hyam & David I Hastie & Tanja Zeller & Benoit Liquet & Paul Newcombe & Loic Yengo & Philipp S Wild & Arne Schillert & Andreas Ziegler & Sune F Nielsen & Adam S Butterwo, 2013. "GUESS-ing Polygenic Associations with Multiple Phenotypes Using a GPU-Based Evolutionary Stochastic Search Algorithm," PLOS Genetics, Public Library of Science, vol. 9(8), pages 1-17, August.
- Paul F O’Reilly & Clive J Hoggart & Yotsawat Pomyen & Federico C F Calboli & Paul Elliott & Marjo-Riitta Jarvelin & Lachlan J M Coin, 2012. "MultiPhen: Joint Model of Multiple Phenotypes Can Increase Discovery in GWAS," PLOS ONE, Public Library of Science, vol. 7(5), pages 1-1, May.
- Parkhomenko Elena & Tritchler David & Beyene Joseph, 2009. "Sparse Canonical Correlation Analysis with Application to Genomic Data Integration," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-36, January.
- Witten Daniela M & Tibshirani Robert J., 2009. "Extensions of Sparse Canonical Correlation Analysis with Applications to Genomic Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 8(1), pages 1-29, June.
- Tamra E Meyer & Germaine C Verwoert & Shih-Jen Hwang & Nicole L Glazer & Albert V Smith & Frank J A van Rooij & Georg B Ehret & Eric Boerwinkle & Janine F Felix & Tennille S Leak & Tamara B Harris & Q, 2010. "Genome-Wide Association Studies of Serum Magnesium, Potassium, and Sodium Concentrations Identify Six Loci Influencing Serum Magnesium Levels," PLOS Genetics, Public Library of Science, vol. 6(8), pages 1-11, August.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Nan Lin & Yun Zhu & Ruzong Fan & Momiao Xiong, 2017. "A quadratically regularized functional canonical correlation analysis for identifying the global structure of pleiotropy with NGS data," PLOS Computational Biology, Public Library of Science, vol. 13(10), pages 1-33, October.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Wang, Wenjia & Zhou, Yi-Hui, 2021. "Eigenvector-based sparse canonical correlation analysis: Fast computation for estimation of multiple canonical vectors," Journal of Multivariate Analysis, Elsevier, vol. 185(C).
- Dmitry Kobak & Yves Bernaerts & Marissa A. Weis & Federico Scala & Andreas S. Tolias & Philipp Berens, 2021. "Sparse reduced‐rank regression for exploratory visualisation of paired multivariate data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 70(4), pages 980-1000, August.
- Ronglai Shen & Qianxing Mo & Nikolaus Schultz & Venkatraman E Seshan & Adam B Olshen & Jason Huse & Marc Ladanyi & Chris Sander, 2012. "Integrative Subtype Discovery in Glioblastoma Using iCluster," PLOS ONE, Public Library of Science, vol. 7(4), pages 1-9, April.
- Coleman Jacob & Replogle Joseph & Chandler Gabriel & Hardin Johanna, 2016. "Resistant multiple sparse canonical correlation," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 15(2), pages 123-138, April.
- Chalise, Prabhakar & Fridley, Brooke L., 2012. "Comparison of penalty functions for sparse canonical correlation analysis," Computational Statistics & Data Analysis, Elsevier, vol. 56(2), pages 245-254.
- Zhang Fan & Miecznikowski Jeffrey C. & Tritchler David L., 2020. "Identification of supervised and sparse functional genomic pathways," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 19(1), pages 1-27, February.
- Kai Wang, 2014. "Testing Genetic Association by Regressing Genotype over Multiple Phenotypes," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-9, September.
- Szefer Elena & Lu Donghuan & Nathoo Farouk & Beg Mirza Faisal & Graham Jinko, 2017. "Multivariate association between single-nucleotide polymorphisms in Alzgene linkage regions and structural changes in the brain: discovery, refinement and validation," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 16(5-6), pages 367-386, December.
- Lee Woojoo & Lee Donghwan & Lee Youngjo & Pawitan Yudi, 2011. "Sparse Canonical Covariance Analysis for High-throughput Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-24, July.
- Huanhuan Zhu & Shuanglin Zhang & Qiuying Sha, 2018. "A novel method to test associations between a weighted combination of phenotypes and genetic variants," PLOS ONE, Public Library of Science, vol. 13(1), pages 1-17, January.
- Lukáš Malec & Vladimír Janovský, 2020. "Connecting the multivariate partial least squares with canonical analysis: a path-following approach," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 14(3), pages 589-609, September.
- Xue Yuan & Wang Jinjuan & Ding Juan & Zhang Sanguo & Li Qizhai, 2019. "A powerful test for ordinal trait genetic association analysis," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 18(2), pages 1-9, April.
- Bin Li & Hyunjin Shin & Georgy Gulbekyan & Olga Pustovalova & Yuri Nikolsky & Andrew Hope & Marina Bessarabova & Matthew Schu & Elona Kolpakova-Hart & David Merberg & Andrew Dorner & William L Trepicc, 2015. "Development of a Drug-Response Modeling Framework to Identify Cell Line Derived Translational Biomarkers That Can Predict Treatment Outcome to Erlotinib or Sorafenib," PLOS ONE, Public Library of Science, vol. 10(6), pages 1-20, June.
- Langworthy, Benjamin W. & Stephens, Rebecca L. & Gilmore, John H. & Fine, Jason P., 2021. "Canonical correlation analysis for elliptical copulas," Journal of Multivariate Analysis, Elsevier, vol. 183(C).
- Lin Zhang & Lei Sun, 2022. "A generalized robust allele‐based genetic association test," Biometrics, The International Biometric Society, vol. 78(2), pages 487-498, June.
- Yu-Mei Chang & Erin Hadox & Balazs Szladovits & Oliver A Garden, 2016. "Serum Biochemical Phenotypes in the Domestic Dog," PLOS ONE, Public Library of Science, vol. 11(2), pages 1-17, February.
- Yunfeng Zhang & Irina Gaynanova, 2022. "Joint association and classification analysis of multi‐view data," Biometrics, The International Biometric Society, vol. 78(4), pages 1614-1625, December.
- Jung, Sungkyu, 2018. "Continuum directions for supervised dimension reduction," Computational Statistics & Data Analysis, Elsevier, vol. 125(C), pages 27-43.
- Zihuai He & Erin K Payne & Bhramar Mukherjee & Seunggeun Lee & Jennifer A Smith & Erin B Ware & Brisa N Sánchez & Teresa E Seeman & Sharon L R Kardia & Ana V Diez Roux, 2015. "Association between Stress Response Genes and Features of Diurnal Cortisol Curves in the Multi-Ethnic Study of Atherosclerosis: A New Multi-Phenotype Approach for Gene-Based Association Tests," PLOS ONE, Public Library of Science, vol. 10(5), pages 1-15, May.
- Nan Lin & Yun Zhu & Ruzong Fan & Momiao Xiong, 2017. "A quadratically regularized functional canonical correlation analysis for identifying the global structure of pleiotropy with NGS data," PLOS Computational Biology, Public Library of Science, vol. 13(10), pages 1-33, October.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1003876. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.