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Human CD4-binding site antibody elicited by polyvalent DNA prime-protein boost vaccine neutralizes cross-clade tier-2-HIV strains

Author

Listed:
  • Shixia Wang

    (University of Massachusetts Chan Medical School)

  • Kun-Wei Chan

    (New York University Grossman School of Medicine)

  • Danlan Wei

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Xiuwen Ma

    (University of Massachusetts Chan Medical School)

  • Shuying Liu

    (SYL Consulting)

  • Guangnan Hu

    (University of Massachusetts Chan Medical School)

  • Saeyoung Park

    (University of Massachusetts Chan Medical School)

  • Ruimin Pan

    (New York University Grossman School of Medicine)

  • Ying Gu

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Alexandra F. Nazzari

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Adam S. Olia

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Kai Xu

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Bob C. Lin

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Mark K. Louder

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Krisha McKee

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Nicole A. Doria-Rose

    (National Institute of Allergy and Infectious Diseases, NIH)

  • David Montefiori

    (Duke University)

  • Michael S. Seaman

    (Beth Israel Deaconess Medical Center, Harvard Medical School)

  • Tongqing Zhou

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Peter D. Kwong

    (National Institute of Allergy and Infectious Diseases, NIH)

  • James Arthos

    (National Institute of Allergy and Infectious Diseases, NIH)

  • Xiang-Peng Kong

    (New York University Grossman School of Medicine)

  • Shan Lu

    (University of Massachusetts Chan Medical School)

Abstract

The vaccine elicitation of HIV tier-2-neutralization antibodies has been a challenge. Here, we report the isolation and characterization of a CD4-binding site (CD4bs) specific monoclonal antibody, HmAb64, from a human volunteer immunized with a polyvalent DNA prime-protein boost HIV vaccine. HmAb64 is derived from heavy chain variable germline gene IGHV1-18 and light chain germline gene IGKV1-39. It has a third heavy chain complementarity-determining region (CDR H3) of 15 amino acids. On a cross-clade panel of 208 HIV-1 pseudo-virus strains, HmAb64 neutralized 20 (10%), including tier-2 strains from clades B, BC, C, and G. The cryo-EM structure of the antigen-binding fragment of HmAb64 in complex with a CNE40 SOSIP trimer revealed details of its recognition; HmAb64 uses both heavy and light CDR3s to recognize the CD4-binding loop, a critical component of the CD4bs. This study demonstrates that a gp120-based vaccine can elicit antibodies capable of tier 2-HIV neutralization.

Suggested Citation

  • Shixia Wang & Kun-Wei Chan & Danlan Wei & Xiuwen Ma & Shuying Liu & Guangnan Hu & Saeyoung Park & Ruimin Pan & Ying Gu & Alexandra F. Nazzari & Adam S. Olia & Kai Xu & Bob C. Lin & Mark K. Louder & Kr, 2024. "Human CD4-binding site antibody elicited by polyvalent DNA prime-protein boost vaccine neutralizes cross-clade tier-2-HIV strains," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-48514-8
    DOI: 10.1038/s41467-024-48514-8
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    as
    1. Zhi Yang & Kim-Marie A. Dam & Michael D. Bridges & Magnus A. G. Hoffmann & Andrew T. DeLaitsch & Harry B. Gristick & Amelia Escolano & Rajeev Gautam & Malcolm A. Martin & Michel C. Nussenzweig & Wayne, 2022. "Neutralizing antibodies induced in immunized macaques recognize the CD4-binding site on an occluded-open HIV-1 envelope trimer," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    2. Xiping Wei & Julie M. Decker & Shuyi Wang & Huxiong Hui & John C. Kappes & Xiaoyun Wu & Jesus F. Salazar-Gonzalez & Maria G. Salazar & J. Michael Kilby & Michael S. Saag & Natalia L. Komarova & Martin, 2003. "Antibody neutralization and escape by HIV-1," Nature, Nature, vol. 422(6929), pages 307-312, March.
    3. Gabriel Ozorowski & Jesper Pallesen & Natalia de Val & Dmitry Lyumkis & Christopher A. Cottrell & Jonathan L. Torres & Jeffrey Copps & Robyn L. Stanfield & Albert Cupo & Pavel Pugach & John P. Moore &, 2017. "Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike," Nature, Nature, vol. 547(7663), pages 360-363, July.
    4. Hua-Xin Liao & Rebecca Lynch & Tongqing Zhou & Feng Gao & S. Munir Alam & Scott D. Boyd & Andrew Z. Fire & Krishna M. Roskin & Chaim A. Schramm & Zhenhai Zhang & Jiang Zhu & Lawrence Shapiro & James C, 2013. "Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus," Nature, Nature, vol. 496(7446), pages 469-476, April.
    5. Richard Wyatt & Peter D. Kwong & Elizabeth Desjardins & Raymond W. Sweet & James Robinson & Wayne A. Hendrickson & Joseph G. Sodroski, 1998. "The antigenic structure of the HIV gp120 envelope glycoprotein," Nature, Nature, vol. 393(6686), pages 705-711, June.
    6. Peter D. Kwong & Richard Wyatt & James Robinson & Raymond W. Sweet & Joseph Sodroski & Wayne A. Hendrickson, 1998. "Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody," Nature, Nature, vol. 393(6686), pages 648-659, June.
    7. Peter D. Kwong & Michael L. Doyle & David J. Casper & Claudia Cicala & Stephanie A. Leavitt & Shahzad Majeed & Tavis D. Steenbeke & Miro Venturi & Irwin Chaiken & Michael Fung & Hermann Katinger & Pau, 2002. "HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites," Nature, Nature, vol. 420(6916), pages 678-682, December.
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