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Defining the core Arabidopsis thaliana root microbiome

Author

Listed:
  • Derek S. Lundberg

    (University of North Carolina
    Curriculum in Genetics and Molecular Biology, University of North Carolina)

  • Sarah L. Lebeis

    (University of North Carolina)

  • Sur Herrera Paredes

    (University of North Carolina)

  • Scott Yourstone

    (University of North Carolina
    Curriculum in Bioinformatics and Computational Biology, University of North Carolina)

  • Jase Gehring

    (University of North Carolina)

  • Stephanie Malfatti

    (DOE Joint Genome Institute)

  • Julien Tremblay

    (DOE Joint Genome Institute)

  • Anna Engelbrektson

    (DOE Joint Genome Institute
    Present addresses: Department of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102, USA (A.E.); Taxon Biosciences, Inc., Tiburon, California 94920, USA (V.K.).)

  • Victor Kunin

    (DOE Joint Genome Institute
    Present addresses: Department of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102, USA (A.E.); Taxon Biosciences, Inc., Tiburon, California 94920, USA (V.K.).)

  • Tijana Glavina del Rio

    (DOE Joint Genome Institute)

  • Robert C. Edgar

    (Taxon Biosciences, Inc.)

  • Thilo Eickhorst

    (Soil Science, Faculty of Biology and Chemistry, University of Bremen)

  • Ruth E. Ley

    (Cornell University)

  • Philip Hugenholtz

    (DOE Joint Genome Institute
    Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences & Institute for Molecular Bioscience, The University of Queensland)

  • Susannah Green Tringe

    (DOE Joint Genome Institute)

  • Jeffery L. Dangl

    (University of North Carolina
    Curriculum in Genetics and Molecular Biology, University of North Carolina
    University of North Carolina
    Carolina Center for Genome Sciences, University of North Carolina)

Abstract

Sequencing of the Arabidopsis thaliana root microbiome shows that its composition is strongly influenced by location, inside or outside the root, and by soil type.

Suggested Citation

  • Derek S. Lundberg & Sarah L. Lebeis & Sur Herrera Paredes & Scott Yourstone & Jase Gehring & Stephanie Malfatti & Julien Tremblay & Anna Engelbrektson & Victor Kunin & Tijana Glavina del Rio & Robert , 2012. "Defining the core Arabidopsis thaliana root microbiome," Nature, Nature, vol. 488(7409), pages 86-90, August.
    • Handle: RePEc:nat:nature:v:488:y:2012:i:7409:d:10.1038_nature11237
    DOI: 10.1038/nature11237
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    Cited by:

    1. Lilan Lu & Chaoqun Tong & Yingying Liu & Weibo Yang, 2024. "Analysis of Physicochemical Properties, Enzyme Activity, Microbial Diversity in Rhizosphere Soil of Coconut ( Cocos nucifera L.) Under Organic and Chemical Fertilizers, Irrigation Conditions," Agriculture, MDPI, vol. 14(11), pages 1-27, October.
    2. Giuseppe Malgioglio & Giulio Flavio Rizzo & Sebastian Nigro & Vincent Lefebvre du Prey & Joelle Herforth-Rahmé & Vittoria Catara & Ferdinando Branca, 2022. "Plant-Microbe Interaction in Sustainable Agriculture: The Factors That May Influence the Efficacy of PGPM Application," Sustainability, MDPI, vol. 14(4), pages 1-28, February.
    3. Ying Wang & Mei Wang & Zhen’an Yang & Yalin Jiao & Guangming Chu, 2022. "Dominant Fungal Communities Aggregate in the Shallow Rhizosphere Soil of Anabasis aphylla," Sustainability, MDPI, vol. 14(22), pages 1-14, November.
    4. Tonjock Rosemary Kinge & Soumya Ghosh & Errol D. Cason & Marieka Gryzenhout, 2022. "Characterization of the Endophytic Mycobiome in Cowpea ( Vigna unguiculata ) from a Single Location Using Illumina Sequencing," Agriculture, MDPI, vol. 12(3), pages 1-15, February.
    5. Carla L. Abán & Giovanni Larama & Antonella Ducci & Jorgelina Huidobro & Michel Abanto & Silvina Vargas-Gil & Carolina Pérez-Brandan, 2022. "Soil Properties and Bacterial Communities Associated with the Rhizosphere of the Common Bean after Using Brachiaria brizantha as a Service Crop: A 10-Year Field Experiment," Sustainability, MDPI, vol. 15(1), pages 1-23, December.
    6. Nicholas Ozede Igiehon & Olubukola Oluranti Babalola, 2018. "Rhizosphere Microbiome Modulators: Contributions of Nitrogen Fixing Bacteria towards Sustainable Agriculture," IJERPH, MDPI, vol. 15(4), pages 1-25, March.
    7. Luigi Russi & Gianpiero Marconi & Nicoletta Ferradini & Beatrice Farda & Marika Pellegrini & Loretta Pace, 2022. "Investigating Population Genetic Diversity and Rhizosphere Microbiota of Central Apennines’ Artemisia eriantha," Sustainability, MDPI, vol. 14(18), pages 1-14, September.
    8. Jake M. Robinson & Jacob G. Mills & Martin F. Breed, 2018. "Walking Ecosystems in Microbiome-Inspired Green Infrastructure: An Ecological Perspective on Enhancing Personal and Planetary Health," Challenges, MDPI, vol. 9(2), pages 1-15, November.
    9. Jianli Liao & Jun Ye & Yun Liang & Muhammad Khalid & Danfeng Huang, 2019. "Pakchoi Antioxidant Improvement and Differential Rhizobacterial Community Composition under Organic Fertilization," Sustainability, MDPI, vol. 11(8), pages 1-16, April.
    10. Amrita Gupta & Udai B. Singh & Pramod K. Sahu & Surinder Paul & Adarsh Kumar & Deepti Malviya & Shailendra Singh & Pandiyan Kuppusamy & Prakash Singh & Diby Paul & Jai P. Rai & Harsh V. Singh & Madhab, 2022. "Linking Soil Microbial Diversity to Modern Agriculture Practices: A Review," IJERPH, MDPI, vol. 19(5), pages 1-29, March.

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