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Ball-and-chain inactivation of a human large conductance calcium-activated potassium channel

Author

Listed:
  • Shubhangi Agarwal

    (Weill Cornell Medical College)

  • Elizabeth D. Kim

    (Weill Cornell Medical College)

  • Sangyun Lee

    (Weill Cornell Medical College)

  • Alexander Simon

    (Weill Cornell Medical College)

  • Alessio Accardi

    (Weill Cornell Medical College
    Weill Cornell Medical College)

  • Crina M. Nimigean

    (Weill Cornell Medical College
    Weill Cornell Medical College)

Abstract

BK channels are large-conductance calcium (Ca2+)-activated potassium channels crucial for neuronal excitability, muscle contraction, and neurotransmitter release. The pore-forming (α) subunits co-assemble with auxiliary (β and γ) subunits that modulate their function. Previous studies demonstrated that the N-termini of β2-subunits can inactivate BK channels, but with no structural correlate. Here, we investigate BK β2-subunit inactivation using cryo-electron microscopy, electrophysiology and molecular dynamics simulations. We find that the β2 N-terminus occludes the pore only in the Ca2+-bound open state, via a ball-and-chain mechanism. The first three hydrophobic residues of β2 are crucial for occlusion, while the remainder of the N-terminus remains flexible. Neither the closed channel conformation obtained in the absence of Ca2+ nor an intermediate conformation found in the presence of Ca2+ show density for the N-terminus of the β2 subunit in their pore, likely due to narrower side access portals preventing their entry into the channel pore.

Suggested Citation

  • Shubhangi Agarwal & Elizabeth D. Kim & Sangyun Lee & Alexander Simon & Alessio Accardi & Crina M. Nimigean, 2025. "Ball-and-chain inactivation of a human large conductance calcium-activated potassium channel," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:16:y:2025:i:1:d:10.1038_s41467-025-56844-4
    DOI: 10.1038/s41467-025-56844-4
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    References listed on IDEAS

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    1. Ming Zhou & João H. Morais-Cabral & Sabine Mann & Roderick MacKinnon, 2001. "Potassium channel receptor site for the inactivation gate and quaternary amine inhibitors," Nature, Nature, vol. 411(6838), pages 657-661, June.
    2. Richard K. Hite & Xiao Tao & Roderick MacKinnon, 2017. "Structural basis for gating the high-conductance Ca2+-activated K+ channel," Nature, Nature, vol. 541(7635), pages 52-57, January.
    3. Jiangtao Zhang & Yiqiang Shi & Junping Fan & Huiwen Chen & Zhanyi Xia & Bo Huang & Juquan Jiang & Jianke Gong & Zhuo Huang & Daohua Jiang, 2022. "N-type fast inactivation of a eukaryotic voltage-gated sodium channel," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    4. Chen Fan & Nattakan Sukomon & Emelie Flood & Jan Rheinberger & Toby W. Allen & Crina M. Nimigean, 2020. "Ball-and-chain inactivation in a calcium-gated potassium channel," Nature, Nature, vol. 580(7802), pages 288-293, April.
    5. Tobias Raisch & Andreas Brockmann & Ulrich Ebbinghaus-Kintscher & Jörg Freigang & Oliver Gutbrod & Jan Kubicek & Barbara Maertens & Oliver Hofnagel & Stefan Raunser, 2021. "Small molecule modulation of the Drosophila Slo channel elucidated by cryo-EM," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    6. Joshua P. Whitt & Jenna R. Montgomery & Andrea L. Meredith, 2016. "BK channel inactivation gates daytime excitability in the circadian clock," Nature Communications, Nature, vol. 7(1), pages 1-13, April.
    7. Xiao Tao & Richard K. Hite & Roderick MacKinnon, 2017. "Cryo-EM structure of the open high-conductance Ca2+-activated K+ channel," Nature, Nature, vol. 541(7635), pages 46-51, January.
    8. Carlos Gonzalez & Angelica Lopez-Rodriguez & Deepa Srikumar & Joshua J.C. Rosenthal & Miguel Holmgren, 2011. "Editing of human KV1.1 channel mRNAs disrupts binding of the N-terminus tip at the intracellular cavity," Nature Communications, Nature, vol. 2(1), pages 1-6, September.
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