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Non-viral DNA delivery and TALEN editing correct the sickle cell mutation in hematopoietic stem cells

Author

Listed:
  • Arianna Moiani

    (Cellectis S.A.)

  • Gil Letort

    (Cellectis S.A.)

  • Sabrina Lizot

    (Cellectis S.A.)

  • Anne Chalumeau

    (INSERM UMR 1163)

  • Chloe Foray

    (Cellectis S.A.)

  • Tristan Felix

    (INSERM UMR 1163)

  • Diane Clerre

    (Cellectis S.A.)

  • Sonal Temburni-Blake

    (Cellectis Inc.)

  • Patrick Hong

    (Cellectis Inc.)

  • Sophie Leduc

    (Cellectis S.A.)

  • Noemie Pinard

    (Cellectis S.A.)

  • Alan Marechal

    (Cellectis S.A.)

  • Eduardo Seclen

    (Cellectis Inc.)

  • Alex Boyne

    (Cellectis Inc.)

  • Louisa Mayer

    (Cellectis Inc.)

  • Robert Hong

    (Cellectis Inc.)

  • Sylvain Pulicani

    (Cellectis S.A.)

  • Roman Galetto

    (Cellectis S.A.)

  • Agnès Gouble

    (Cellectis S.A.)

  • Marina Cavazzana

    (Assistance Publique Hopitaux de Paris
    Paris Cité University
    Assistance Publique Hopitaux de Paris)

  • Alexandre Juillerat

    (Cellectis Inc.)

  • Annarita Miccio

    (INSERM UMR 1163)

  • Aymeric Duclert

    (Cellectis S.A.)

  • Philippe Duchateau

    (Cellectis S.A.)

  • Julien Valton

    (Cellectis S.A.)

Abstract

Sickle cell disease is a devastating blood disorder that originates from a single point mutation in the HBB gene coding for hemoglobin. Here, we develop a GMP-compatible TALEN-mediated gene editing process enabling efficient HBB correction via a DNA repair template while minimizing risks associated with HBB inactivation. Comparing viral versus non-viral DNA repair template delivery in hematopoietic stem and progenitor cells in vitro, both strategies achieve comparable HBB correction and result in over 50% expression of normal adult hemoglobin in red blood cells without inducing β-thalassemic phenotype. In an immunodeficient female mouse model, transplanted cells edited with the non-viral strategy exhibit higher engraftment and gene correction levels compared to those edited with the viral strategy. Transcriptomic analysis reveals that non-viral DNA repair template delivery mitigates P53-mediated toxicity and preserves high levels of long-term hematopoietic stem cells. This work paves the way for TALEN-based autologous gene therapy for sickle cell disease.

Suggested Citation

  • Arianna Moiani & Gil Letort & Sabrina Lizot & Anne Chalumeau & Chloe Foray & Tristan Felix & Diane Clerre & Sonal Temburni-Blake & Patrick Hong & Sophie Leduc & Noemie Pinard & Alan Marechal & Eduardo, 2024. "Non-viral DNA delivery and TALEN editing correct the sickle cell mutation in hematopoietic stem cells," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-49353-3
    DOI: 10.1038/s41467-024-49353-3
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    as
    1. Mohit Sachdeva & Brian W. Busser & Sonal Temburni & Billal Jahangiri & Anne-Sophie Gautron & Alan Maréchal & Alexandre Juillerat & Alan Williams & Stéphane Depil & Philippe Duchateau & Laurent Poirot , 2019. "Repurposing endogenous immune pathways to tailor and control chimeric antigen receptor T cell functionality," Nature Communications, Nature, vol. 10(1), pages 1-16, December.
    2. Sandra Wimberger & Nina Akrap & Mike Firth & Johan Brengdahl & Susanna Engberg & Marie K. Schwinn & Michael R. Slater & Anders Lundin & Pei-Pei Hsieh & Songyuan Li & Silvia Cerboni & Jonathan Sumner &, 2023. "Simultaneous inhibition of DNA-PK and Polϴ improves integration efficiency and precision of genome editing," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    3. Danilo Pellin & Mariana Loperfido & Cristina Baricordi & Samuel L. Wolock & Annita Montepeloso & Olga K. Weinberg & Alessandra Biffi & Allon M. Klein & Luca Biasco, 2019. "A comprehensive single cell transcriptional landscape of human hematopoietic progenitors," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
    4. Gregory A. Newby & Jonathan S. Yen & Kaitly J. Woodard & Thiyagaraj Mayuranathan & Cicera R. Lazzarotto & Yichao Li & Heather Sheppard-Tillman & Shaina N. Porter & Yu Yao & Kalin Mayberry & Kelcee A. , 2021. "Base editing of haematopoietic stem cells rescues sickle cell disease in mice," Nature, Nature, vol. 595(7866), pages 295-302, July.
    5. Daniel P. Dever & Rasmus O. Bak & Andreas Reinisch & Joab Camarena & Gabriel Washington & Carmencita E. Nicolas & Mara Pavel-Dinu & Nivi Saxena & Alec B. Wilkens & Sruthi Mantri & Nobuko Uchida & Ayal, 2016. "CRISPR/Cas9 β-globin gene targeting in human haematopoietic stem cells," Nature, Nature, vol. 539(7629), pages 384-389, November.
    6. Matthew C. Canver & Elenoe C. Smith & Falak Sher & Luca Pinello & Neville E. Sanjana & Ophir Shalem & Diane D. Chen & Patrick G. Schupp & Divya S. Vinjamur & Sara P. Garcia & Sidinh Luc & Ryo Kurita &, 2015. "BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis," Nature, Nature, vol. 527(7577), pages 192-197, November.
    7. Stamatis Papathanasiou & Styliani Markoulaki & Logan J. Blaine & Mitchell L. Leibowitz & Cheng-Zhong Zhang & Rudolf Jaenisch & David Pellman, 2021. "Whole chromosome loss and genomic instability in mouse embryos after CRISPR-Cas9 genome editing," Nature Communications, Nature, vol. 12(1), pages 1-7, December.
    8. Rajeswari Jayavaradhan & Devin M. Pillis & Michael Goodman & Fan Zhang & Yue Zhang & Paul R. Andreassen & Punam Malik, 2019. "CRISPR-Cas9 fusion to dominant-negative 53BP1 enhances HDR and inhibits NHEJ specifically at Cas9 target sites," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
    9. Ron Baik & M. Kyle Cromer & Steve E. Glenn & Christopher A. Vakulskas & Kay O. Chmielewski & Amanda M. Dudek & William N. Feist & Julia Klermund & Suzette Shipp & Toni Cathomen & Daniel P. Dever & Mat, 2024. "Transient inhibition of 53BP1 increases the frequency of targeted integration in human hematopoietic stem and progenitor cells," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    10. Florian T. Merkle & Sulagna Ghosh & Nolan Kamitaki & Jana Mitchell & Yishai Avior & Curtis Mello & Seva Kashin & Shila Mekhoubad & Dusko Ilic & Maura Charlton & Genevieve Saphier & Robert E. Handsaker, 2017. "Human pluripotent stem cells recurrently acquire and expand dominant negative P53 mutations," Nature, Nature, vol. 545(7653), pages 229-233, May.
    11. Marina Cavazzana-Calvo & Emmanuel Payen & Olivier Negre & Gary Wang & Kathleen Hehir & Floriane Fusil & Julian Down & Maria Denaro & Troy Brady & Karen Westerman & Resy Cavallesco & Beatrix Gillet-Leg, 2010. "Transfusion independence and HMGA2 activation after gene therapy of human β-thalassaemia," Nature, Nature, vol. 467(7313), pages 318-322, September.
    12. Grégoire Cullot & Julian Boutin & Jérôme Toutain & Florence Prat & Perrine Pennamen & Caroline Rooryck & Martin Teichmann & Emilie Rousseau & Isabelle Lamrissi-Garcia & Véronique Guyonnet-Duperat & Al, 2019. "CRISPR-Cas9 genome editing induces megabase-scale chromosomal truncations," Nature Communications, Nature, vol. 10(1), pages 1-14, December.
    13. Robert A. J. Signer & Jeffrey A. Magee & Adrian Salic & Sean J. Morrison, 2014. "Haematopoietic stem cells require a highly regulated protein synthesis rate," Nature, Nature, vol. 509(7498), pages 49-54, May.
    14. Andrew V. Anzalone & Peyton B. Randolph & Jessie R. Davis & Alexander A. Sousa & Luke W. Koblan & Jonathan M. Levy & Peter J. Chen & Christopher Wilson & Gregory A. Newby & Aditya Raguram & David R. L, 2019. "Search-and-replace genome editing without double-strand breaks or donor DNA," Nature, Nature, vol. 576(7785), pages 149-157, December.
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