IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-49204-1.html
   My bibliography  Save this article

Inhibition and transport mechanisms of the ABC transporter hMRP5

Author

Listed:
  • Ying Huang

    (Shenzhen
    Shenzhen)

  • Chenyang Xue

    (Shenzhen
    Shenzhen)

  • Ruiqian Bu

    (Shenzhen
    Shenzhen)

  • Cang Wu

    (Shenzhen
    Shenzhen)

  • Jiachen Li

    (Zhejiang University)

  • Jinqiu Zhang

    (Zhejiang University)

  • Jinyu Chen

    (Zhejiang University)

  • Zhaoying Shi

    (Shenzhen)

  • Yonglong Chen

    (Shenzhen)

  • Yong Wang

    (Zhejiang University
    International Campus of Zhejiang University)

  • Zhongmin Liu

    (Shenzhen
    Shenzhen
    Shenzhen)

Abstract

Human multidrug resistance protein 5 (hMRP5) effluxes anticancer and antivirus drugs, driving multidrug resistance. To uncover the mechanism of hMRP5, we determine six distinct cryo-EM structures, revealing an autoinhibitory N-terminal peptide that must dissociate to permit subsequent substrate recruitment. Guided by these molecular insights, we design an inhibitory peptide that could block substrate entry into the transport pathway. We also identify a regulatory motif, comprising a positively charged cluster and hydrophobic patches, within the first nucleotide-binding domain that modulates hMRP5 localization by engaging with membranes. By integrating our structural, biochemical, computational, and cell biological findings, we propose a model for hMRP5 conformational cycling and localization. Overall, this work provides mechanistic understanding of hMRP5 function, while informing future selective hMRP5 inhibitor development. More broadly, this study advances our understanding of the structural dynamics and inhibition of ABC transporters.

Suggested Citation

  • Ying Huang & Chenyang Xue & Ruiqian Bu & Cang Wu & Jiachen Li & Jinqiu Zhang & Jinyu Chen & Zhaoying Shi & Yonglong Chen & Yong Wang & Zhongmin Liu, 2024. "Inhibition and transport mechanisms of the ABC transporter hMRP5," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-49204-1
    DOI: 10.1038/s41467-024-49204-1
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-49204-1
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-49204-1?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Joseph L. Watson & David Juergens & Nathaniel R. Bennett & Brian L. Trippe & Jason Yim & Helen E. Eisenach & Woody Ahern & Andrew J. Borst & Robert J. Ragotte & Lukas F. Milles & Basile I. M. Wicky & , 2023. "De novo design of protein structure and function with RFdiffusion," Nature, Nature, vol. 620(7976), pages 1089-1100, August.
    2. Gilbert Di Paolo & Pietro De Camilli, 2006. "Phosphoinositides in cell regulation and membrane dynamics," Nature, Nature, vol. 443(7112), pages 651-657, October.
    3. Michael L. Oldham & Richard K. Hite & Alanna M. Steffen & Ermelinda Damko & Zongli Li & Thomas Walz & Jue Chen, 2016. "A mechanism of viral immune evasion revealed by cryo-EM analysis of the TAP transporter," Nature, Nature, vol. 529(7587), pages 537-540, January.
    4. Nitesh Kumar Khandelwal & Thomas M. Tomasiak, 2024. "Structural basis for autoinhibition by the dephosphorylated regulatory domain of Ycf1," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Sarah C. Bickers & Samir Benlekbir & John L. Rubinstein & Voula Kanelis, 2024. "Structure of a dimeric full-length ABC transporter," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    2. Yue Huang & Ruipeng Mu & David Wen & Joseph S Grimsby & Meina Liang & Anton I Rosenbaum, 2021. "Differences in levels of phosphatidylinositols in healthy and stable Coronary Artery Disease subjects revealed by HILIC-MRM method with SERRF normalization," PLOS ONE, Public Library of Science, vol. 16(6), pages 1-14, June.
    3. Antonio L Egea-Jiménez & Ángel Pérez-Lara & Senena Corbalán-García & Juan C Gómez-Fernández, 2013. "Phosphatidylinositol 4,5-Bisphosphate Decreases the Concentration of Ca2+, Phosphatidylserine and Diacylglycerol Required for Protein Kinase C α to Reach Maximum Activity," PLOS ONE, Public Library of Science, vol. 8(7), pages 1-8, July.
    4. Maria Thürmer & André Gollowitzer & Helmut Pein & Konstantin Neukirch & Elif Gelmez & Lorenz Waltl & Natalie Wielsch & René Winkler & Konstantin Löser & Julia Grander & Madlen Hotze & Sönke Harder & A, 2022. "PI(18:1/18:1) is a SCD1-derived lipokine that limits stress signaling," Nature Communications, Nature, vol. 13(1), pages 1-21, December.
    5. Simeon D. Castle & Michiel Stock & Thomas E. Gorochowski, 2024. "Engineering is evolution: a perspective on design processes to engineer biology," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    6. Nitesh Kumar Khandelwal & Thomas M. Tomasiak, 2024. "Structural basis for autoinhibition by the dephosphorylated regulatory domain of Ycf1," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    7. Aika Iwama & Ryoji Kise & Hiroaki Akasaka & Fumiya K. Sano & Hidetaka S. Oshima & Asuka Inoue & Wataru Shihoya & Osamu Nureki, 2024. "Structure and dynamics of the pyroglutamylated RF-amide peptide QRFP receptor GPR103," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    8. Nilmani Singh & Adriana Reyes-Ordoñez & Michael A. Compagnone & Jesus F. Moreno & Benjamin J. Leslie & Taekjip Ha & Jie Chen, 2021. "Redefining the specificity of phosphoinositide-binding by human PH domain-containing proteins," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
    9. Lucien F. Krapp & Fernando A. Meireles & Luciano A. Abriata & Jean Devillard & Sarah Vacle & Maria J. Marcaida & Matteo Dal Peraro, 2024. "Context-aware geometric deep learning for protein sequence design," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    10. Ryan D. Kibler & Sangmin Lee & Madison A. Kennedy & Basile I. M. Wicky & Stella M. Lai & Marius M. Kostelic & Ann Carr & Xinting Li & Cameron M. Chow & Tina K. Nguyen & Lauren Carter & Vicki H. Wysock, 2024. "Design of pseudosymmetric protein hetero-oligomers," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    11. Patrick Bryant & Atharva Kelkar & Andrea Guljas & Cecilia Clementi & Frank Noé, 2024. "Structure prediction of protein-ligand complexes from sequence information with Umol," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    12. William Mo & Christopher A. Vaiana & Chris J. Myers, 2024. "The need for adaptability in detection, characterization, and attribution of biosecurity threats," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
    13. Di-Ao Liu & Kai Tao & Bin Wu & Ziyan Yu & Malwina Szczepaniak & Matthew Rames & Changsong Yang & Tatyana Svitkina & Yueyao Zhu & Fengyuan Xu & Xiaolin Nan & Wei Guo, 2023. "A phosphoinositide switch mediates exocyst recruitment to multivesicular endosomes for exosome secretion," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    14. Wei Yang & Derrick R. Hicks & Agnidipta Ghosh & Tristin A. Schwartze & Brian Conventry & Inna Goreshnik & Aza Allen & Samer F. Halabiya & Chan Johng Kim & Cynthia S. Hinck & David S. Lee & Asim K. Ber, 2025. "Design of high-affinity binders to immune modulating receptors for cancer immunotherapy," Nature Communications, Nature, vol. 16(1), pages 1-12, December.
    15. Xiaorui Wang & Xiaodan Yin & Dejun Jiang & Huifeng Zhao & Zhenxing Wu & Odin Zhang & Jike Wang & Yuquan Li & Yafeng Deng & Huanxiang Liu & Pei Luo & Yuqiang Han & Tingjun Hou & Xiaojun Yao & Chang-Yu , 2024. "Multi-modal deep learning enables efficient and accurate annotation of enzymatic active sites," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
    16. Wei Lu & Jixian Zhang & Weifeng Huang & Ziqiao Zhang & Xiangyu Jia & Zhenyu Wang & Leilei Shi & Chengtao Li & Peter G. Wolynes & Shuangjia Zheng, 2024. "DynamicBind: predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    17. Jun Gyou Park & Songwon Kim & Eunhong Jang & Seung Hun Choi & Hyunsu Han & Seulgi Ju & Ji Won Kim & Da Sol Min & Mi Sun Jin, 2022. "The lysosomal transporter TAPL has a dual role as peptide translocator and phosphatidylserine floppase," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    18. Meghana Kshirsagar & Artur Meller & Ian R. Humphreys & Samuel Sledzieski & Yixi Xu & Rahul Dodhia & Eric Horvitz & Bonnie Berger & Gregory R. Bowman & Juan Lavista Ferres & David Baker & Minkyung Baek, 2025. "Rapid and accurate prediction of protein homo-oligomer symmetry using Seq2Symm," Nature Communications, Nature, vol. 16(1), pages 1-11, December.
    19. Chase R. Freschlin & Sarah A. Fahlberg & Pete Heinzelman & Philip A. Romero, 2024. "Neural network extrapolation to distant regions of the protein fitness landscape," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    20. Enrico Orsi & Lennart Schada von Borzyskowski & Stephan Noack & Pablo I. Nikel & Steffen N. Lindner, 2024. "Automated in vivo enzyme engineering accelerates biocatalyst optimization," Nature Communications, Nature, vol. 15(1), pages 1-14, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-49204-1. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.