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ALLO-1- and IKKE-1-dependent positive feedback mechanism promotes the initiation of paternal mitochondrial autophagy

Author

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  • Taeko Sasaki

    (Gunma University, Maebashi
    Gunma University, Maebashi)

  • Yasuharu Kushida

    (Gunma University, Maebashi)

  • Takuya Norizuki

    (Gunma University, Maebashi)

  • Hidetaka Kosako

    (Tokushima University)

  • Ken Sato

    (Gunma University, Maebashi)

  • Miyuki Sato

    (Gunma University, Maebashi)

Abstract

Allophagy is responsible for the selective removal of paternally inherited organelles, including mitochondria, in Caenorhabditis elegans embryos, thereby facilitating the maternal inheritance of mitochondrial DNA. We previously identified two key factors in allophagy: an autophagy adaptor allophagy-1 (ALLO-1) and TBK1/IKKε family kinase IKKE-1. However, the precise mechanisms by which ALLO-1 and IKKE-1 regulate local autophagosome formation remain unclear. In this study, we identify two ALLO-1 isoforms with different substrate preferences during allophagy. Live imaging reveals a stepwise mechanism of ALLO-1 localization with rapid cargo recognition, followed by ALLO-1 accumulation around the cargo. In the ikke-1 mutant, the accumulation of ALLO-1, and not the recognition of cargo, is impaired, resulting in the failure of isolation membrane formation. Our results also suggest a feedback mechanism for ALLO-1 accumulation via EPG-7/ATG-11, a worm homolog of FIP200, which is a candidate for IKKE-1-dependent phosphorylation. This feedback mechanism may underlie the ALLO-1-dependent initiation and progression of autophagosome formation around paternal organelles.

Suggested Citation

  • Taeko Sasaki & Yasuharu Kushida & Takuya Norizuki & Hidetaka Kosako & Ken Sato & Miyuki Sato, 2024. "ALLO-1- and IKKE-1-dependent positive feedback mechanism promotes the initiation of paternal mitochondrial autophagy," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45863-2
    DOI: 10.1038/s41467-024-45863-2
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    References listed on IDEAS

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    1. Keisuke Mochida & Yu Oikawa & Yayoi Kimura & Hiromi Kirisako & Hisashi Hirano & Yoshinori Ohsumi & Hitoshi Nakatogawa, 2015. "Receptor-mediated selective autophagy degrades the endoplasmic reticulum and the nucleus," Nature, Nature, vol. 522(7556), pages 359-362, June.
    2. Benjamin Scott Padman & Thanh Ngoc Nguyen & Louise Uoselis & Marvin Skulsuppaisarn & Lan K. Nguyen & Michael Lazarou, 2019. "LC3/GABARAPs drive ubiquitin-independent recruitment of Optineurin and NDP52 to amplify mitophagy," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
    3. Zixuan Zhou & Jianping Liu & Tao Fu & Ping Wu & Chao Peng & Xinyu Gong & Yingli Wang & Mingfang Zhang & Ying Li & Yaru Wang & Xiaolong Xu & Miao Li & Lifeng Pan, 2021. "Phosphorylation regulates the binding of autophagy receptors to FIP200 Claw domain for selective autophagy initiation," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    4. Michael Lazarou & Danielle A. Sliter & Lesley A. Kane & Shireen A. Sarraf & Chunxin Wang & Jonathon L. Burman & Dionisia P. Sideris & Adam I. Fogel & Richard J. Youle, 2015. "The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy," Nature, Nature, vol. 524(7565), pages 309-314, August.
    5. Keisuke Mochida & Akinori Yamasaki & Kazuaki Matoba & Hiromi Kirisako & Nobuo N. Noda & Hitoshi Nakatogawa, 2020. "Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
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