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Petal abscission is promoted by jasmonic acid-induced autophagy at Arabidopsis petal bases

Author

Listed:
  • Yuki Furuta

    (Graduate School of Science and Technology, Nara Institute of Science and Technology)

  • Haruka Yamamoto

    (Graduate School of Science and Technology, Nara Institute of Science and Technology)

  • Takeshi Hirakawa

    (Graduate School of Science and Technology, Nara Institute of Science and Technology)

  • Akira Uemura

    (Graduate School of Science and Technology, Nara Institute of Science and Technology)

  • Margaret Anne Pelayo

    (Graduate School of Science and Technology, Nara Institute of Science and Technology
    Trinity College Dublin)

  • Hideaki Iimura

    (Graduate School of Science and Technology, Nara Institute of Science and Technology
    Kazusa DNA Research Institute)

  • Naoya Katagiri

    (Graduate School of Science and Technology, Nara Institute of Science and Technology)

  • Noriko Takeda-Kamiya

    (RIKEN Center for Sustainable Resource Science)

  • Kie Kumaishi

    (RIKEN BioResource Research Center)

  • Makoto Shirakawa

    (Graduate School of Science and Technology, Nara Institute of Science and Technology
    Japan Science and Technology Agency)

  • Sumie Ishiguro

    (Nagoya University, Furo-cho, Chikusa-ku)

  • Yasunori Ichihashi

    (RIKEN Center for Sustainable Resource Science)

  • Takamasa Suzuki

    (Chubu University)

  • Tatsuaki Goh

    (Graduate School of Science and Technology, Nara Institute of Science and Technology)

  • Kiminori Toyooka

    (RIKEN Center for Sustainable Resource Science)

  • Toshiro Ito

    (Graduate School of Science and Technology, Nara Institute of Science and Technology)

  • Nobutoshi Yamaguchi

    (Graduate School of Science and Technology, Nara Institute of Science and Technology)

Abstract

In angiosperms, the transition from floral-organ maintenance to abscission determines reproductive success and seed dispersion. For petal abscission, cell-fate decisions specifically at the petal-cell base are more important than organ-level senescence or cell death in petals. However, how this transition is regulated remains unclear. Here, we identify a jasmonic acid (JA)-regulated chromatin-state switch at the base of Arabidopsis petals that directs local cell-fate determination via autophagy. During petal maintenance, co-repressors of JA signaling accumulate at the base of petals to block MYC activity, leading to lower levels of ROS. JA acts as an airborne signaling molecule transmitted from stamens to petals, accumulating primarily in petal bases to trigger chromatin remodeling. This allows MYC transcription factors to promote chromatin accessibility for downstream targets, including NAC DOMAIN-CONTAINING PROTEIN102 (ANAC102). ANAC102 accumulates specifically at the petal base prior to abscission and triggers ROS accumulation and cell death via AUTOPHAGY-RELATED GENEs induction. Developmentally induced autophagy at the petal base causes maturation, vacuolar delivery, and breakdown of autophagosomes for terminal cell differentiation. Dynamic changes in vesicles and cytoplasmic components in the vacuole occur in many plants, suggesting JA–NAC-mediated local cell-fate determination by autophagy may be conserved in angiosperms.

Suggested Citation

  • Yuki Furuta & Haruka Yamamoto & Takeshi Hirakawa & Akira Uemura & Margaret Anne Pelayo & Hideaki Iimura & Naoya Katagiri & Noriko Takeda-Kamiya & Kie Kumaishi & Makoto Shirakawa & Sumie Ishiguro & Yas, 2024. "Petal abscission is promoted by jasmonic acid-induced autophagy at Arabidopsis petal bases," Nature Communications, Nature, vol. 15(1), pages 1-24, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-45371-3
    DOI: 10.1038/s41467-024-45371-3
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    1. A. Chini & S. Fonseca & G. Fernández & B. Adie & J. M. Chico & O. Lorenzo & G. García-Casado & I. López-Vidriero & F. M. Lozano & M. R. Ponce & J. L. Micol & R. Solano, 2007. "The JAZ family of repressors is the missing link in jasmonate signalling," Nature, Nature, vol. 448(7154), pages 666-671, August.
    2. Fran Supek & Matko Bošnjak & Nives Škunca & Tomislav Šmuc, 2011. "REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms," PLOS ONE, Public Library of Science, vol. 6(7), pages 1-9, July.
    3. Nobutoshi Yamaguchi & Satoshi Matsubara & Kaori Yoshimizu & Motohide Seki & Kouta Hamada & Mari Kamitani & Yuko Kurita & Yasuyuki Nomura & Kota Nagashima & Soichi Inagaki & Takamasa Suzuki & Eng-Seng , 2021. "H3K27me3 demethylases alter HSP22 and HSP17.6C expression in response to recurring heat in Arabidopsis," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
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