IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-023-44654-5.html
   My bibliography  Save this article

De novo biosynthesis of the hops bioactive flavonoid xanthohumol in yeast

Author

Listed:
  • Shan Yang

    (Chinese Academy of Sciences
    University of Chinese Academy of Sciences)

  • Ruibing Chen

    (Chinese Academy of Sciences)

  • Xuan Cao

    (Chinese Academy of Sciences)

  • Guodong Wang

    (Chinese Academy of Sciences)

  • Yongjin J. Zhou

    (Chinese Academy of Sciences
    Chinese Academy of Sciences
    Chinese Academy of Sciences)

Abstract

The flavonoid xanthohumol is an important flavor substance in the brewing industry that has a wide variety of bioactivities. However, its unstable structure results in its low content in beer. Microbial biosynthesis is considered a sustainable and economically viable alternative. Here, we harness the yeast Saccharomyces cerevisiae for the de novo biosynthesis of xanthohumol from glucose by balancing the three parallel biosynthetic pathways, prenyltransferase engineering, enhancing precursor supply, constructing enzyme fusion, and peroxisomal engineering. These strategies improve the production of the key xanthohumol precursor demethylxanthohumol (DMX) by 83-fold and achieve the de novo biosynthesis of xanthohumol in yeast. We also reveal that prenylation is the key limiting step in DMX biosynthesis and develop tailored metabolic regulation strategies to enhance the DMAPP availability and prenylation efficiency. Our work provides feasible approaches for systematically engineering yeast cell factories for the de novo biosynthesis of complex natural products.

Suggested Citation

  • Shan Yang & Ruibing Chen & Xuan Cao & Guodong Wang & Yongjin J. Zhou, 2024. "De novo biosynthesis of the hops bioactive flavonoid xanthohumol in yeast," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-023-44654-5
    DOI: 10.1038/s41467-023-44654-5
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-44654-5
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-44654-5?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Codruta Ignea & Morten H. Raadam & Mohammed S. Motawia & Antonios M. Makris & Claudia E. Vickers & Sotirios C. Kampranis, 2019. "Orthogonal monoterpenoid biosynthesis in yeast constructed on an isomeric substrate," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
    2. C. J. Paddon & P. J. Westfall & D. J. Pitera & K. Benjamin & K. Fisher & D. McPhee & M. D. Leavell & A. Tai & A. Main & D. Eng & D. R. Polichuk & K. H. Teoh & D. W. Reed & T. Treynor & J. Lenihan & H., 2013. "High-level semi-synthetic production of the potent antimalarial artemisinin," Nature, Nature, vol. 496(7446), pages 528-532, April.
    3. Charles M. Denby & Rachel A. Li & Van T. Vu & Zak Costello & Weiyin Lin & Leanne Jade G. Chan & Joseph Williams & Bryan Donaldson & Charles W. Bamforth & Christopher J. Petzold & Henrik V. Scheller & , 2018. "Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    4. Yongjin J. Zhou & Nicolaas A. Buijs & Zhiwei Zhu & Jiufu Qin & Verena Siewers & Jens Nielsen, 2016. "Production of fatty acid-derived oleochemicals and biofuels by synthetic yeast cell factories," Nature Communications, Nature, vol. 7(1), pages 1-9, September.
    5. Xiaonan Liu & Jian Cheng & Guanghui Zhang & Wentao Ding & Lijin Duan & Jing Yang & Ling Kui & Xiaozhi Cheng & Jiangxing Ruan & Wei Fan & Junwen Chen & Guangqiang Long & Yan Zhao & Jing Cai & Wen Wang , 2018. "Engineering yeast for the production of breviscapine by genomic analysis and synthetic biology approaches," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Guangjian Li & Hui Liang & Ruichen Gao & Ling Qin & Pei Xu & Mingtao Huang & Min-Hua Zong & Yufei Cao & Wen-Yong Lou, 2024. "Yeast metabolism adaptation for efficient terpenoids synthesis via isopentenol utilization," Nature Communications, Nature, vol. 15(1), pages 1-12, December.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Liu, Zihe & Moradi, Hamideh & Shi, Shuobo & Darvishi, Farshad, 2021. "Yeasts as microbial cell factories for sustainable production of biofuels," Renewable and Sustainable Energy Reviews, Elsevier, vol. 143(C).
    2. Vayu Maini Rekdal & Casper R. B. Luijt & Yan Chen & Ramu Kakumanu & Edward E. K. Baidoo & Christopher J. Petzold & Pablo Cruz-Morales & Jay D. Keasling, 2024. "Edible mycelium bioengineered for enhanced nutritional value and sensory appeal using a modular synthetic biology toolkit," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    3. Codruta Ignea & Morten H. Raadam & Aikaterini Koutsaviti & Yong Zhao & Yao-Tao Duan & Maria Harizani & Karel Miettinen & Panagiota Georgantea & Mads Rosenfeldt & Sara E. Viejo-Ledesma & Mikael A. Pete, 2022. "Expanding the terpene biosynthetic code with non-canonical 16 carbon atom building blocks," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    4. Bingyin Peng & Lygie Esquirol & Zeyu Lu & Qianyi Shen & Li Chen Cheah & Christopher B. Howard & Colin Scott & Matt Trau & Geoff Dumsday & Claudia E. Vickers, 2022. "An in vivo gene amplification system for high level expression in Saccharomyces cerevisiae," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    5. Shao-Yang Li & Gao-Qian Wang & Liang Long & Jia-Ling Gao & Zheng-Qun Zhou & Yong-Heng Wang & Jian-Ming Lv & Guo-Dong Chen & Dan Hu & Ikuro Abe & Hao Gao, 2024. "Functional and structural dissection of glycosyltransferases underlying the glycodiversity of wolfberry-derived bioactive ingredients lycibarbarspermidines," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    6. Briardo Llorente & Thomas C. Williams & Hugh D. Goold & Isak S. Pretorius & Ian T. Paulsen, 2022. "Harnessing bioengineered microbes as a versatile platform for space nutrition," Nature Communications, Nature, vol. 13(1), pages 1-7, December.
    7. Anna Zimmermann & Julian E. Prieto-Vivas & Charlotte Cautereels & Anton Gorkovskiy & Jan Steensels & Yves Peer & Kevin J. Verstrepen, 2023. "A Cas3-base editing tool for targetable in vivo mutagenesis," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    8. Ashty S. Karim & Dylan M. Brown & Chloé M. Archuleta & Sharisse Grannan & Ludmilla Aristilde & Yogesh Goyal & Josh N. Leonard & Niall M. Mangan & Arthur Prindle & Gabriel J. Rocklin & Keith J. Tyo & L, 2024. "Deconstructing synthetic biology across scales: a conceptual approach for training synthetic biologists," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    9. Justus Wesseler & Gijs Kleter & Marthe Meulenbroek & Kai P. Purnhagen, 2023. "EU regulation of genetically modified microorganisms in light of new policy developments: Possible implications for EU bioeconomy investments," Applied Economic Perspectives and Policy, John Wiley & Sons, vol. 45(2), pages 839-859, June.
    10. Leixia Chu & Xiaoxia Luo & Taoting Zhu & Yingying Cao & Lili Zhang & Zixin Deng & Jiangtao Gao, 2022. "Harnessing phosphonate antibiotics argolaphos biosynthesis enables a synthetic biology-based green synthesis of glyphosate," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    11. Wenna Li & Zhao Zhou & Xianglai Li & Lin Ma & Qingyuan Guan & Guojun Zheng & Hao Liang & Yajun Yan & Xiaolin Shen & Jia Wang & Xinxiao Sun & Qipeng Yuan, 2022. "Biosynthesis of plant hemostatic dencichine in Escherichia coli," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    12. Das, Manali & Patra, Pradipta & Ghosh, Amit, 2020. "Metabolic engineering for enhancing microbial biosynthesis of advanced biofuels," Renewable and Sustainable Energy Reviews, Elsevier, vol. 119(C).
    13. Yang-le Gao & Jason E. Cournoyer & Bidhan C. De & Catherine L. Wallace & Alexander V. Ulanov & Michael R. La Frano & Angad P. Mehta, 2024. "Introducing carbon assimilation in yeasts using photosynthetic directed endosymbiosis," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    14. Xixian Chen & Rehka T & Jérémy Esque & Congqiang Zhang & Sudha Shukal & Chin Chin Lim & Leonard Ong & Derek Smith & Isabelle André, 2022. "Total enzymatic synthesis of cis-α-irone from a simple carbon source," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    15. Nikolaj Lervad Hansen & Louise Kjaerulff & Quinn Kalby Heck & Victor Forman & Dan Staerk & Birger Lindberg Møller & Johan Andersen-Ranberg, 2022. "Tripterygium wilfordii cytochrome P450s catalyze the methyl shift and epoxidations in the biosynthesis of triptonide," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    16. Jack Chun-Ting Liu & Ricardo De La Peña & Christian Tocol & Elizabeth S. Sattely, 2024. "Reconstitution of early paclitaxel biosynthetic network," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    17. Hao-Tian Wang & Zi-Long Wang & Kuan Chen & Ming-Ju Yao & Meng Zhang & Rong-Shen Wang & Jia-He Zhang & Hans Ågren & Fu-Dong Li & Junhao Li & Xue Qiao & Min Ye, 2023. "Insights into the missing apiosylation step in flavonoid apiosides biosynthesis of Leguminosae plants," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    18. Ruiqi Yan & Binghan Xie & Kebo Xie & Qi Liu & Songyang Sui & Shuqi Wang & Dawei Chen & Jimei Liu & Ridao Chen & Jungui Dai & Lin Yang, 2024. "Unravelling and reconstructing the biosynthetic pathway of bergenin," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    19. Hongjiao Zhang & Zixin Li & Shuang Zhou & Shu-Ming Li & Huomiao Ran & Zili Song & Tao Yu & Wen-Bing Yin, 2022. "A fungal NRPS-PKS enzyme catalyses the formation of the flavonoid naringenin," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    20. Abigail E. Bryson & Emily R. Lanier & Kin H. Lau & John P. Hamilton & Brieanne Vaillancourt & Davis Mathieu & Alan E. Yocca & Garret P. Miller & Patrick P. Edger & C. Robin Buell & Björn Hamberger, 2023. "Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory," Nature Communications, Nature, vol. 14(1), pages 1-14, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-023-44654-5. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.