Transcriptional reprogramming by mutated IRF4 in lymphoma
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DOI: 10.1038/s41467-023-41954-8
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- Alexander Lachmann & Denis Torre & Alexandra B. Keenan & Kathleen M. Jagodnik & Hoyjin J. Lee & Lily Wang & Moshe C. Silverstein & Avi Ma’ayan, 2018. "Massive mining of publicly available RNA-seq data from human and mouse," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
- Carlos R. Escalante & Junming Yie & Dimitris Thanos & Aneel K. Aggarwal, 1998. "Structure of IRF-1 with bound DNA reveals determinants of interferon regulation," Nature, Nature, vol. 391(6662), pages 103-106, January.
- Vu N. Ngo & R. Eric Davis & Laurence Lamy & Xin Yu & Hong Zhao & Georg Lenz & Lloyd T. Lam & Sandeep Dave & Liming Yang & John Powell & Louis M. Staudt, 2006. "A loss-of-function RNA interference screen for molecular targets in cancer," Nature, Nature, vol. 441(7089), pages 106-110, May.
- Arthur L. Shaffer & N. C. Tolga Emre & Laurence Lamy & Vu N. Ngo & George Wright & Wenming Xiao & John Powell & Sandeep Dave & Xin Yu & Hong Zhao & Yuxin Zeng & Bangzheng Chen & Joshua Epstein & Louis, 2008. "IRF4 addiction in multiple myeloma," Nature, Nature, vol. 454(7201), pages 226-231, July.
- Kenichi Yoshida & Masashi Sanada & Yuichi Shiraishi & Daniel Nowak & Yasunobu Nagata & Ryo Yamamoto & Yusuke Sato & Aiko Sato-Otsubo & Ayana Kon & Masao Nagasaki & George Chalkidis & Yutaka Suzuki & M, 2011. "Frequent pathway mutations of splicing machinery in myelodysplasia," Nature, Nature, vol. 478(7367), pages 64-69, October.
- Indre Piragyte & Thomas Clapes & Aikaterini Polyzou & Ramon I. Klein Geltink & Stylianos Lefkopoulos & Na Yin & Pierre Cauchy & Jonathan D. Curtis & Lhéanna Klaeylé & Xavier Langa & Cora C. A. Beckman, 2018. "A metabolic interplay coordinated by HLX regulates myeloid differentiation and AML through partly overlapping pathways," Nature Communications, Nature, vol. 9(1), pages 1-17, December.
- Matthias Reisser & Anja Palmer & Achim P. Popp & Christopher Jahn & Gilbert Weidinger & J. Christof M. Gebhardt, 2018. "Single-molecule imaging correlates decreasing nuclear volume with increasing TF-chromatin associations during zebrafish development," Nature Communications, Nature, vol. 9(1), pages 1-11, December.
- Peng Li & Rosanne Spolski & Wei Liao & Lu Wang & Theresa L. Murphy & Kenneth M. Murphy & Warren J. Leonard, 2012. "BATF–JUN is critical for IRF4-mediated transcription in T cells," Nature, Nature, vol. 490(7421), pages 543-546, October.
- Lin Chen & J. N. Mark Glover & Patrick G. Hogan & Anjana Rao & Stephen C. Harrison, 1998. "Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA," Nature, Nature, vol. 392(6671), pages 42-48, March.
- Remo Rohs & Sean M. West & Alona Sosinsky & Peng Liu & Richard S. Mann & Barry Honig, 2009. "The role of DNA shape in protein–DNA recognition," Nature, Nature, vol. 461(7268), pages 1248-1253, October.
- Raymond E. Moellering & Melanie Cornejo & Tina N. Davis & Cristina Del Bianco & Jon C. Aster & Stephen C. Blacklow & Andrew L. Kung & D. Gary Gilliland & Gregory L. Verdine & James E. Bradner, 2009. "Direct inhibition of the NOTCH transcription factor complex," Nature, Nature, vol. 462(7270), pages 182-188, November.
- Robert E. Thurman & Eric Rynes & Richard Humbert & Jeff Vierstra & Matthew T. Maurano & Eric Haugen & Nathan C. Sheffield & Andrew B. Stergachis & Hao Wang & Benjamin Vernot & Kavita Garg & Sam John &, 2012. "The accessible chromatin landscape of the human genome," Nature, Nature, vol. 489(7414), pages 75-82, September.
- Laura Pasqualucci & Peter Neumeister & Tina Goossens & Gouri Nanjangud & R. S. K. Chaganti & Ralf Küppers & Riccardo Dalla-Favera, 2001. "Hypermutation of multiple proto-oncogenes in B-cell diffuse large-cell lymphomas," Nature, Nature, vol. 412(6844), pages 341-346, July.
- Roxane Tussiwand & Wan-Ling Lee & Theresa L. Murphy & Mona Mashayekhi & Wumesh KC & Jörn C. Albring & Ansuman T. Satpathy & Jeffrey A. Rotondo & Brian T. Edelson & Nicole M. Kretzer & Xiaodi Wu & Lesl, 2012. "Compensatory dendritic cell development mediated by BATF–IRF interactions," Nature, Nature, vol. 490(7421), pages 502-507, October.
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