START domains generate paralog-specific regulons from a single network architecture
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DOI: 10.1038/s41467-024-54269-z
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- Janik Sielemann & Donat Wulf & Romy Schmidt & Andrea Bräutigam, 2021. "Local DNA shape is a general principle of transcription factor binding specificity in Arabidopsis thaliana," Nature Communications, Nature, vol. 12(1), pages 1-8, December.
- Liang-Yu Fu & Tao Zhu & Xinkai Zhou & Ranran Yu & Zhaohui He & Peijing Zhang & Zhigui Wu & Ming Chen & Kerstin Kaufmann & Dijun Chen, 2022. "ChIP-Hub provides an integrative platform for exploring plant regulome," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
- Zachery R. Smith & Jeff A. Long, 2010. "Control of Arabidopsis apical–basal embryo polarity by antagonistic transcription factors," Nature, Nature, vol. 464(7287), pages 423-426, March.
- Wickham, Hadley, 2007. "Reshaping Data with the reshape Package," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 21(i12).
- Ksenia Pougach & Arnout Voet & Fyodor A. Kondrashov & Karin Voordeckers & Joaquin F. Christiaens & Bianka Baying & Vladimir Benes & Ryo Sakai & Jan Aerts & Bo Zhu & Patrick Van Dijck & Kevin J. Verstr, 2015. "Correction: Corrigendum: Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network," Nature Communications, Nature, vol. 6(1), pages 1-1, May.
- Siqian Feng & Chaitanya Rastogi & Ryan Loker & William J. Glassford & H. Tomas Rube & Harmen J. Bussemaker & Richard S. Mann, 2022. "Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
- Remo Rohs & Sean M. West & Alona Sosinsky & Peng Liu & Richard S. Mann & Barry Honig, 2009. "The role of DNA shape in protein–DNA recognition," Nature, Nature, vol. 461(7268), pages 1248-1253, October.
- Jane R. McConnell & John Emery & Yuval Eshed & Ning Bao & John Bowman & M. Kathryn Barton, 2001. "Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots," Nature, Nature, vol. 411(6838), pages 709-713, June.
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