CAJAL enables analysis and integration of single-cell morphological data using metric geometry
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DOI: 10.1038/s41467-023-39424-2
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- Michael P. Hart & Oliver Hobert, 2018. "Neurexin controls plasticity of a mature, sexually dimorphic neuron," Nature, Nature, vol. 553(7687), pages 165-170, January.
- Gioele La Manno & Ruslan Soldatov & Amit Zeisel & Emelie Braun & Hannah Hochgerner & Viktor Petukhov & Katja Lidschreiber & Maria E. Kastriti & Peter Lönnerberg & Alessandro Furlan & Jean Fan & Lars E, 2018. "RNA velocity of single cells," Nature, Nature, vol. 560(7719), pages 494-498, August.
- Bosiljka Tasic & Zizhen Yao & Lucas T. Graybuck & Kimberly A. Smith & Thuc Nghi Nguyen & Darren Bertagnolli & Jeff Goldy & Emma Garren & Michael N. Economo & Sarada Viswanathan & Osnat Penn & Trygve B, 2018. "Shared and distinct transcriptomic cell types across neocortical areas," Nature, Nature, vol. 563(7729), pages 72-78, November.
- Charles R. Harris & K. Jarrod Millman & Stéfan J. Walt & Ralf Gommers & Pauli Virtanen & David Cournapeau & Eric Wieser & Julian Taylor & Sebastian Berg & Nathaniel J. Smith & Robert Kern & Matti Picu, 2020. "Array programming with NumPy," Nature, Nature, vol. 585(7825), pages 357-362, September.
- Federico Scala & Dmitry Kobak & Matteo Bernabucci & Yves Bernaerts & Cathryn René Cadwell & Jesus Ramon Castro & Leonard Hartmanis & Xiaolong Jiang & Sophie Laturnus & Elanine Miranda & Shalaka Mulher, 2021. "Phenotypic variation of transcriptomic cell types in mouse motor cortex," Nature, Nature, vol. 598(7879), pages 144-150, October.
- Peter G. Fuerst & Amane Koizumi & Richard H. Masland & Robert W. Burgess, 2008. "Neurite arborization and mosaic spacing in the mouse retina require DSCAM," Nature, Nature, vol. 451(7177), pages 470-474, January.
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