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Genomic epidemiology of Vibrio cholerae during a mass vaccination campaign of displaced communities in Bangladesh

Author

Listed:
  • Alyce Taylor-Brown

    (Parasites & Microbes Programme, Wellcome Sanger Institute, Wellcome Genome Campus)

  • Mokibul Hassan Afrad

    (Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b))

  • Ashraful Islam Khan

    (Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b))

  • Florent Lassalle

    (Parasites & Microbes Programme, Wellcome Sanger Institute, Wellcome Genome Campus)

  • Md. Taufiqul Islam

    (Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b)
    Griffith University)

  • Nabid Anjum Tanvir

    (Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b))

  • Nicholas R. Thomson

    (Parasites & Microbes Programme, Wellcome Sanger Institute, Wellcome Genome Campus
    London School of Hygiene and Tropical Medicine)

  • Firdausi Qadri

    (Infectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b))

Abstract

Ongoing diarrheal disease surveillance throughout Bangladesh over the last decade has revealed seasonal localised cholera outbreaks in Cox’s Bazar, where both Bangladeshi Nationals and Forcibly Displaced Myanmar Nationals (FDMNs) reside in densely populated settlements. FDMNs were recently targeted for the largest cholera vaccination campaign in decades. We aimed to infer the epidemic risk of circulating Vibrio cholerae strains by determining if isolates linked to the ongoing global cholera pandemic (“7PET” lineage) were responsible for outbreaks in Cox’s Bazar. We found two sublineages of 7PET in this setting during the study period; one with global distribution, and a second lineage restricted to Asia and the Middle East. These subclades were associated with different disease patterns that could be partially explained by genomic differences. Here we show that as the pandemic V. cholerae lineage circulates in this vulnerable population, without a vaccine intervention, the risk of an epidemic was very high.

Suggested Citation

  • Alyce Taylor-Brown & Mokibul Hassan Afrad & Ashraful Islam Khan & Florent Lassalle & Md. Taufiqul Islam & Nabid Anjum Tanvir & Nicholas R. Thomson & Firdausi Qadri, 2023. "Genomic epidemiology of Vibrio cholerae during a mass vaccination campaign of displaced communities in Bangladesh," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39415-3
    DOI: 10.1038/s41467-023-39415-3
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    References listed on IDEAS

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    1. Ankur Mutreja & Dong Wook Kim & Nicholas R. Thomson & Thomas R. Connor & Je Hee Lee & Samuel Kariuki & Nicholas J. Croucher & Seon Young Choi & Simon R. Harris & Michael Lebens & Swapan Kumar Niyogi &, 2011. "Evidence for several waves of global transmission in the seventh cholera pandemic," Nature, Nature, vol. 477(7365), pages 462-465, September.
    2. Abdinasir Abubakar & Andrew S Azman & John Rumunu & Iza Ciglenecki & Trina Helderman & Haley West & Justin Lessler & David A Sack & Stephen Martin & William Perea & Dominique Legros & Francisco J Luqu, 2015. "The First Use of the Global Oral Cholera Vaccine Emergency Stockpile: Lessons from South Sudan," PLOS Medicine, Public Library of Science, vol. 12(11), pages 1-8, November.
    3. Mihaela Oprea & Elisabeth Njamkepo & Daniela Cristea & Anna Zhukova & Clifford G. Clark & Anatoly N. Kravetz & Elena Monakhova & Adriana S. Ciontea & Radu Cojocaru & Jean Rauzier & Maria Damian & Oliv, 2020. "The seventh pandemic of cholera in Europe revisited by microbial genomics," Nature Communications, Nature, vol. 11(1), pages 1-10, December.
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